Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n15
(592 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear ... 75 2e-13
AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear r... 75 2e-13
AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear r... 66 1e-10
S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear rib... 62 1e-09
CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein. 62 1e-09
BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear r... 62 1e-09
BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear r... 62 1e-09
AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear ... 62 1e-09
AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear ... 62 1e-09
X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulate... 62 2e-09
AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear r... 61 3e-09
AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear r... 51 3e-06
DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia, complem... 29 9.3
AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens ... 29 9.3
AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia compleme... 29 9.3
AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia compleme... 29 9.3
AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia compleme... 29 9.3
AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia compleme... 29 9.3
>AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 379
Score = 74.9 bits (176), Expect = 2e-13
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQ 592
LSI+A D ET+ EI+K I+P L E+ + GS D + ++R+LIHQ
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCELRLLIHQ 129
>AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear
ribonucleoprotein K isoform a variant protein.
Length = 442
Score = 74.9 bits (176), Expect = 2e-13
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 30 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 89
Query: 455 LSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQ 592
LSI+A D ET+ EI+K I+P L E+ + GS D + ++R+LIHQ
Sbjct: 90 LSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCELRLLIHQ 131
>AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 428
Score = 65.7 bits (153), Expect = 1e-10
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +2
Query: 395 LRSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDV 574
LR+ Y AS++VPD GPER+LSI+A D ET+ EI+K I+P L E+ + GS D + ++
Sbjct: 57 LRTDYNASVSVPDSSGPERILSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCEL 112
Query: 575 RMLIHQ 592
R+LIHQ
Sbjct: 113 RLLIHQ 118
>S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein complex K protein.
Length = 463
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein.
Length = 464
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 62.5 bits (145), Expect = 1e-09
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulated
nuclear protein protein.
Length = 464
Score = 61.7 bits (143), Expect = 2e-09
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 299 KRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERVLSITAE 472
KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+LSI+A
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA- 92
Query: 473 DDETLVEIIKDIMPCLAE 526
D ET+ EI+K I+P L E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
>AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K transcript variant protein.
Length = 464
Score = 60.9 bits (141), Expect = 3e-09
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +2
Query: 281 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 454
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 455 LSITAEDDETLVEIIKDIMPCLAE 526
LSI+ D ET+ EI+K I+P L E
Sbjct: 88 LSIST-DIETIGEILKKIIPTLEE 110
>AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 306
Score = 51.2 bits (117), Expect = 3e-06
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +2
Query: 404 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAE 526
QY AS++VPD GPER+LSI+A D ET+ EI+K I+P L E
Sbjct: 2 QYNASVSVPDSSGPERILSISA-DIETIGEILKKIIPTLEE 41
>DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia,
complementation group D2 protein.
Length = 1471
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens
cDNA FLJ12551 fis, clone NT2RM4000700. ).
Length = 664
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 458 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 488
>AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1451
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 1 protein.
Length = 1471
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 2 protein.
Length = 1451
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1471
Score = 29.5 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 511 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 428
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,694,765
Number of Sequences: 237096
Number of extensions: 1698368
Number of successful extensions: 7276
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7264
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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