Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n14
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 28 1.3
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 2.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 2.9
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 3.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 3.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 5.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.1
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 8.9
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +1
Query: 121 QFNKLVKDAANTSLDAINTDESDLDNLLKIEIACTTRKAEYILEV 255
+ N + KD + L + DL LKI+++C + ++++++
Sbjct: 172 RLNFIAKDQLHPLLSELIVSMDDLTESLKIQVSCRNKLVQWLIKI 216
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 130 KLVKDAANTSLDAINTDESDLDNLLKIE 213
K+V D S ++ + D+ +LDNL K+E
Sbjct: 371 KVVVDQKEASSESSDEDQDELDNLTKVE 398
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -2
Query: 326 CLSFINHVLCLIALEIYSISLHLKTSS-----IYSAFLVVQAISIF-NKLSRSLSSVLIA 165
C SF+ + C++ + YSI L +K S I+S Q +++ N++ +++ + +
Sbjct: 216 CDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGAPQPVTVIRNQVKQTVLADDLV 275
Query: 164 SNDVLAASLTNLLNC 120
D+L S +L C
Sbjct: 276 IGDLLYFSNLDLKTC 290
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 139 KDAANTSLDAINTDESDLDNLLKIEIACTTRKAEYILEVFKCKDMLYISKAIKHSTWL 312
K N + D+ +L LLK + K Y+LE+ + KD+ +S+ ++H + L
Sbjct: 39 KKGTNEEVSVFTFDKKNLSTLLKRGSIDSNLKTNYVLELLR-KDVSSLSR-LRHPSLL 94
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 260 LKTSSIYSAFLVVQAISIFNKLSRSLSSVLIASNDVLAASLTNLLNC 120
L T S+Y L V + K + SLSSVLI + S L NC
Sbjct: 564 LSTQSLYKLTLRVSHLQFTRKSTGSLSSVLIFVKKIGCQS--ELFNC 608
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 DEIRVEEFYHYVKDRQPQDAYKWLQNCS---LGFIETVIKEESNDLPVHIL 576
DE+R YH P+D L NC ++ V+KEES D+ V IL
Sbjct: 257 DELRRINDYH-----APRDKIICLLNCCKVIFSYLRNVVKEESADMFVPIL 302
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 427 LKDEIRVEEFYHYVKDRQPQDAYKWLQNC 513
++D+ RV F+HY + P K NC
Sbjct: 322 VEDQNRVNNFFHYSTPKDPIPFVKLFVNC 350
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 317 FINHVLCL-IALEIYSISLHLKTSSIYSAFLVVQAISIFNKLSRSLSSVLIASNDVLAAS 141
FI CL IA+++ S + KT+ S +L + + + NK SRS + + D+L +
Sbjct: 1084 FIQSQKCLQIAVDL-SDKIFGKTTPTASLYLQLAQLMVLNKDSRSALHAVRVAYDILKET 1142
Query: 140 L 138
L
Sbjct: 1143 L 1143
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 88 LEDVSLGRKHKQFNKLVKDAANTSLDAINTDESDLDNLLKIE 213
L+D+++ + K + K++ N LD N DES+ KIE
Sbjct: 109 LDDLNMSEEPKHHDSSNKESTN--LDNSNMDESENQKNFKIE 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,226
Number of Sequences: 5004
Number of extensions: 43671
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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