Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n14
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 54  LLKNLHNATFNIRRCELRA 110
           +L NLH+  ++ R  ELRA
Sbjct: 169 VLNNLHDPEYSARENELRA 187


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 54  LLKNLHNATFNIRRCELRA 110
           +L NLH+  ++ R  ELRA
Sbjct: 169 VLNNLHDPEYSARENELRA 187


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 54  LLKNLHNATFNIRRCELRA 110
           +L NLH+  ++ R  ELRA
Sbjct: 169 VLNNLHDPEYSARENELRA 187


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 FINPTYLHNELFPNMLKQGINKLMLHIR 420
           FIN  Y  NE+   +L   +N L+++ R
Sbjct: 555 FINNDYNFNEVNFRILGANVNDLIMNTR 582


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 271 MLYISKAIKHSTWLIKDKQ---YSHFINPTYLHNELFPNML 384
           +L +S + K + W +   Q    S+FI P Y H+ +  ++L
Sbjct: 430 LLTMSCSDKIARWNVLGVQGALLSYFIEPIYFHSIVLGSLL 470


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 305 VLCLIALEIYSISLHLKTSSIYSAFLVVQAISI 207
           ++CLIA +I SI+    T+ +   ++V   + +
Sbjct: 291 IMCLIAGKIMSINNLTATAQMLGLYMVTVILGL 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,889
Number of Sequences: 438
Number of extensions: 2900
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)