Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n09
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 0.87
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.6
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 3.5
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 3.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.6
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 25 6.1
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.1
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 25 8.1
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 25 8.1
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 8.1
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +1
Query: 124 CITMVHDSIQYTKSIENMVIDYEDDKNSMIALAEQENIHFYDDFYDEMDSRIKMENSMNM 303
C+ S T ++ +M + EDD ++ + I Y D+ +E + NS++
Sbjct: 1024 CLNSFKTSASATTNVTDMQLLNEDDVALLMTGSSDGTIKLYRDYENEKVELVTSWNSLSD 1083
Query: 304 IFFG 315
+ FG
Sbjct: 1084 LVFG 1087
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -3
Query: 333 HERAYGSKENHIHGILHFDSTVHFIVKVVIKMYIFLFCKSDHRVLIVFIVDHHIFN 166
++R +N + F T+ ++ I +++F FC H IV ++ IFN
Sbjct: 371 YKRDKRKHQNRLRPEARFIMTLFYVWGFPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 169 ENMVIDYEDDKNSMIALAEQENIHFYDDFYDEMDS 273
+ VIDY D+ I ++ NIH D Y ++ S
Sbjct: 687 QKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITS 721
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 154 YTKSIENMVIDYEDDKNSMIALAEQENIHF 243
Y IEN +ID +N+ L +QEN+ F
Sbjct: 499 YLCPIENSLIDLFGSENNKEKLGKQENVRF 528
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 381 FFSESQNVQQTFSIYSHERAYGSKENHIHGILHFDSTVHFIVKVVIKMYIFLFCKS 214
+F+ S+ + Q ++I A GSK GI+H D F+ VIK F KS
Sbjct: 326 YFTASEKIVQAWTI-----ADGSKAPDAAGIIHSDFKKKFVAGEVIKFSDFEKYKS 376
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 163 SIENMVIDYEDDKNSMIALAEQENIHF 243
S EN++ D +DD ++ +++ E E+ HF
Sbjct: 403 SQENVIEDDDDDDDAWVSVDEAESPHF 429
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 425 IKSHIKIVRDIGIKCFLVKVKMCN 354
IK KI+RD+ K KMCN
Sbjct: 26 IKERAKIIRDVSSLVITRKPKMCN 49
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 100 YNLICILCCITMVHDSIQYTKSIENM 177
YNL+C+ CI + DSI + S++ +
Sbjct: 560 YNLLCVRSCIAI--DSISWISSLQGV 583
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 443 AVLPSVIKSHIKIVRDIGIKCFLVKVK 363
A+L + K+ +VRD+G KC L +K
Sbjct: 27 AILNPLAKNIADVVRDLGYKCKLEPLK 53
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 434 PSVIKSHIKIVRDIGIKCFLVKVKMCNKLS 345
P+++KS IKI GI F++K+ N S
Sbjct: 76 PALVKSDIKITDQRGIDEFMIKLDGTNDKS 105
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 8.1
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +1
Query: 259 DEMDSRIKMENSMNMIFFGPVSSFMRIDAESLLHILTFTKKHLIPISRTILIWD--LITD 432
D+ DS M N+M + FFGP + DA S+ H IP + +I ++ +++
Sbjct: 71 DKSDSLELMNNNMGVYFFGPEAG-TEHDAASV------KADHAIPSNTSIYYYEIQILSR 123
Query: 433 GKTA--AFLYSREYLALGPLLNFVPEEDLYYVNFGDK 537
GK + R+ + L E Y+ N G+K
Sbjct: 124 GKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEK 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,203
Number of Sequences: 5004
Number of extensions: 49247
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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