Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n09
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631...    30   1.5  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    29   2.0  
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    29   3.6  
06_01_0075 + 615415-616061,616144-616295,616829-617865                 28   4.7  
11_04_0297 + 16050333-16050348,16050564-16052518                       27   8.2  

>01_06_0649 +
           30861946-30862179,30862702-30862824,30863104-30863197,
           30863819-30863901,30863984-30864073,30864176-30864562,
           30864903-30864991,30867801-30867907,30868431-30868822
          Length = 532

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 387 DSDITDYFNMGLDHRR*DRCFPL*SRVLSTRTSPEFCT 500
           +S+I DY++M LD+   D   PL   +L   TSP  CT
Sbjct: 241 NSEIDDYYSMELDYE--DSGLPLCQVMLPRPTSPTVCT 276


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 238 HFYDDFYDEMDSRIKMENSMNMI--FFGPVSSFMRIDAESLLHILTFTKKHLIPISRTIL 411
           H +++FY ++  R+ + + +NM+  FFG    F R+    ++ I  + ++H   ++R   
Sbjct: 474 HLHENFYGDLQIRLILIDELNMMIFFFGNAQFFSRL---QIIFIRVWDQQHTRNLTRWRS 530

Query: 412 IW 417
            W
Sbjct: 531 AW 532


>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +1

Query: 100 YNLICILCCI-TMVHDSIQYTKSIEN--MVIDYEDDKNSMIALAEQENIHFYDDFYDEMD 270
           YN     C I   V D I Y    EN  +V+D+      +     + ++HF D  Y ++ 
Sbjct: 366 YNNEVSTCTIHDEVRDLIAYKSVEENFVLVLDFYRKDVELSDKVRRLSVHFGDIKYAKIP 425

Query: 271 SRIKMENSMNMIFFGPVSSFMRIDAESLLHIL 366
           + I+     ++ FFG       +    LL +L
Sbjct: 426 TNIRTSEVRSLTFFGLCKCMPSLTEFKLLRVL 457


>06_01_0075 + 615415-616061,616144-616295,616829-617865
          Length = 611

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 256 YDEMDSR---IKMENSMNMIFFGPVSSFMRIDAESLLHILTFTKKHL 387
           + E+++R   + ME  + M  F P  SF   DA+ +L + +F  K +
Sbjct: 458 HQELENRFDEVSMELLLCMSAFNPTDSFASFDAQKILRLASFYPKDI 504


>11_04_0297 + 16050333-16050348,16050564-16052518
          Length = 656

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 247 DDFYDEMDSR---IKMENSMNMIFFGPVSSFMRIDAESLLHILTFTKKHL 387
           D  + E+++R   + M   + M  F P  SF   DA+ +L + +F  K +
Sbjct: 479 DRIHQELENRFDEVSMALLLCMSAFNPTDSFASFDAQKILRLASFYPKDI 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,409
Number of Sequences: 37544
Number of extensions: 253499
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)