Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n09
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine rece...    29   3.2  
U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine rece...    29   3.2  
Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical...    27   9.7  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    27   9.7  

>U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform a protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 396 YRNQMFFSESQNVQQTFSIYSHERAYGSKENHIHGIL-HFDSTVHFIVKVVI 244
           Y  ++FF    ++   F  YS   A+   +   HGI+    S  H+ +K+V+
Sbjct: 47  YYAELFFFVEFSITMRFRKYSSLYAFFEPDTEFHGIIPRIVSGFHYYIKIVV 98


>U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform b protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 396 YRNQMFFSESQNVQQTFSIYSHERAYGSKENHIHGIL-HFDSTVHFIVKVVI 244
           Y  ++FF    ++   F  YS   A+   +   HGI+    S  H+ +K+V+
Sbjct: 47  YYAELFFFVEFSITMRFRKYSSLYAFFEPDTEFHGIIPRIVSGFHYYIKIVV 98


>Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical
           protein C08F11.5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 220 AEQ-ENIHFYDDFYDEMDSR--IKMENSMNMIFFGPVSSF-MRIDAESLLHILTF 372
           AEQ ENI FY D YDE + +  +K+E      F      +      E  LH  TF
Sbjct: 177 AEQIENITFYSDEYDEENPKELVKLEQWKKAKFIEIYGGYTFPFKVEDFLHFTTF 231


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 88  MIPGYNLICILCCITMVHDSIQYTKSIENMVIDYE 192
           +IP Y+  C   C  ++H   Q+T+ +E    D E
Sbjct: 503 LIPKYSEYCAKTCKYIIHVQNQFTEKMETYAYDCE 537


>AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical
           protein Y87G2A.15 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 387 QMFFSESQNVQQTFSIY--SHERAYGSKENHIHGILHFDSTVHFIVKVVIKM 238
           +M  S+S N+Q+  S+   + E+A+G+    I G   F S +HF    V KM
Sbjct: 134 KMKSSKSCNLQKMSSMLQAASEKAFGTDFEAIAGTGDFASKIHFYSDFVCKM 185


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  AFSLFVTNILFTKIEISITIRLNTC*MIPGY-NLICILCCITMVHDSIQY 156
           +F++FV  +L T I I   ++  +   +  Y +L+C   C++MV+  ++Y
Sbjct: 13  SFAIFV--LLITNILIIFLVKTKSPTKMGSYKHLLCYFSCLSMVYGVLEY 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,075
Number of Sequences: 27780
Number of extensions: 261635
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)