Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n09
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   0.95 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 312 KENHIHGILHFDSTVHFI--VKVVIKMYIFLFCKSDHRVLIVFIVDHHIFNGF 160
           +E+H   I  F S + FI  V++ + +Y F+  K+D     +      IFNG+
Sbjct: 75  RESHCMTIT-FASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGY 126


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 264 FIVKVVIKMYIF-LFCKSDHRVLIVFIVDHHIFNGFRVLY 148
           FI  V    Y+  LFC ++  + +  ++D +  +GF +L+
Sbjct: 418 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 264 FIVKVVIKMYIF-LFCKSDHRVLIVFIVDHHIFNGFRVLY 148
           FI  V    Y+  LFC ++  + +  ++D +  +GF +L+
Sbjct: 471 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 510


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 264 FIVKVVIKMYIFLFCKSDHRVL 199
           F++ + I  ++ +FC S   V+
Sbjct: 90  FVINLAISNFLMMFCMSPPMVI 111


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 102 ISRNHLTRIQSN 67
           +SRN +TR+Q N
Sbjct: 219 LSRNEITRLQEN 230


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 126 TA*NTNQIISRNHLT 82
           TA N+NQI+S N L+
Sbjct: 340 TAMNSNQIVSDNSLS 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,988
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)