Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n07
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.5  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   6.0  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   6.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   7.9  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 DVRVKTVYNGDVMITYINHNIT 307
           D R  T +NGD+ I Y N N T
Sbjct: 620 DARNNTAWNGDIWILYTNQNRT 641


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +2

Query: 233 HVNDVRVKTVYNGDVMITYINHNITFEEFTHEM---VATCRFAPDQV---FTMKWVDEEG 394
           +  +V+++   +   ++  + H+ITF+E   ++   +  C      V     +K+VDE+G
Sbjct: 771 NTTNVKIRLRLHEVSLVLVVAHDITFDELLAKVEHKIKLCGILKQAVPFRVRLKYVDEDG 830

Query: 395 DPCTIST 415
           D  TI++
Sbjct: 831 DFITITS 837


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 254 KTVYNGDVMITYINHNITFEEFTHEMVATCRFAPDQVFTMKWVDEEGDPCTISTQLELDE 433
           KT+    V+   + HN+T  +    +V+    +PD+V  +KW    G   T  T+  +  
Sbjct: 456 KTLVRNLVLALSLCHNVTPSKGHDGVVSYQAASPDEVAIVKWTSTLGLVLTNRTRDAITL 515

Query: 434 SLRLYEL 454
           +  +Y++
Sbjct: 516 NNNVYKI 522


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 494 WRLIHVQ*VRSLGSTRTASVTHPALAVLILCR 399
           WR + V    S G+ R  +    ++++ ILCR
Sbjct: 109 WRKVRVDITSSSGTPRVVNERRSSISIYILCR 140


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 479 HELTSKHPIPVSCTNDIPENSRT 547
           H  TS HP P+S    +P  S T
Sbjct: 143 HGNTSNHPSPISSLESLPSRSST 165


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 269 GDVMITYINHNITFEEFTHEMVATCRFAPDQVFTMKWVDEEGDPCTI 409
           GD+M   IN++   E+ T   +A C  A   V  M ++  +  P  I
Sbjct: 176 GDLMTMLINYDTFSEDVTRFYMAECVLAIADVHRMGYIHRDIKPDNI 222


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 248 RVKTVYNGDVMITYINH 298
           RV TV+N +++  YINH
Sbjct: 746 RVFTVFNANILAPYINH 762


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 391 FFIHPFHCKHLIWSKT 344
           F+I+P HC+ L WSKT
Sbjct: 874 FWINP-HCEMLCWSKT 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,887
Number of Sequences: 5004
Number of extensions: 51681
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)