Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n07
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 32 0.38
01_01_0946 - 7442907-7443284,7443797-7445122 29 2.7
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 28 6.1
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 8.1
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 27 8.1
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 27 8.1
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 27 8.1
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 410 STQLELDESLRLYELNRDSELTVHELTSKHPIPVSCTNDI 529
+T+ E LR+ EL S T+ E + H +PVSC+N+I
Sbjct: 1123 ATRTTYTELLRMQELKNKSNETI-ESSEYHGVPVSCSNNI 1161
>01_01_0946 - 7442907-7443284,7443797-7445122
Length = 567
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = +2
Query: 188 HKSVMMPTQLVNQDNHVNDVRVKTVYNGDVMITYINHNI----TFEEFTHEMV----ATC 343
HK ++ +L N D H ++ ++ NG + + I+H +FE+ T + + A
Sbjct: 399 HKIAVLDMRLANTDRHGGNILIRKDENGQIELIPIDHGYCLPESFEDCTFDWLYWPQARQ 458
Query: 344 RFAPDQVFTMKWVDEEGD 397
F + + +K +DEE D
Sbjct: 459 PFNVETLDYIKSLDEEED 476
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 140 LKNNNKPLPSKEHNPIDKSNQILNSL*PTRFKVITTIYKSL 18
L ++ P+P++E NP++KS LNS ++ I I K L
Sbjct: 470 LDDDKLPIPNEEFNPVNKSTN-LNSSEQIKYINIDEIMKKL 509
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 140 LKNNNKPLPSKEHNPIDKSNQILNS 66
L ++ P+P++E NP++KS ILNS
Sbjct: 493 LDDDKLPIPNEEFNPVNKST-ILNS 516
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 140 LKNNNKPLPSKEHNPIDKSNQILNS 66
L ++ P+P++E NP++KS ILNS
Sbjct: 518 LDDDKLPIPNEEFNPVNKST-ILNS 541
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 388 FIHPFHCKHLIWSKTASSHHLMCKLL 311
FI P+H H W +T S + LL
Sbjct: 29 FIAPYHQGHFFWRRTTSGRQSLASLL 54
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 140 LKNNNKPLPSKEHNPIDKSNQILNS 66
L ++ P+P++E NP++KS ILNS
Sbjct: 496 LDDDKLPIPNEEFNPVNKST-ILNS 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,993,790
Number of Sequences: 37544
Number of extensions: 312422
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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