Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n07
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   0.94 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 476 VHELTSKH--PIPVSCTNDIPENSRTFLNK*YS 568
           VH L+  +  PIP SC N  PEN+   ++  Y+
Sbjct: 148 VHSLSDYNDKPIPASCCNS-PENNTCSISNSYT 179



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 248 VHHLHGYPDSQVVSAS*QIYGHQKCSI*NFYVN 150
           VH L  Y D  + ++      +  CSI N Y N
Sbjct: 148 VHSLSDYNDKPIPASCCNSPENNTCSISNSYTN 180


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 164 NFYV-NDDYLKNNNKPLPSKEHNPIDKSNQILN 69
           NF++ ND+       P P+ E N I+K + I+N
Sbjct: 79  NFFLKNDESESPKLNPYPNWEMNDINKIDSIIN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,988
Number of Sequences: 438
Number of extensions: 3719
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)