Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n02
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    29   0.35 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.4  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   4.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   4.4  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   5.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   5.8  
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf...    25   5.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   7.6  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   7.6  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 209 AWV*RNTSFNFVWIIHFTIY 150
           +W    T+FN +W+IHFT Y
Sbjct: 478 SWFHLVTNFNRIWVIHFTTY 497


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 209 AWV*RNTSFNFVWIIHFTIYLCF*RFLIKTYLIVTVSYYQK 87
           +W    T+FN +W+IHF ++  F  F   T  + T  ++Q+
Sbjct: 508 SWFHLITNFNRIWVIHFGMFWYFTAFNSPT--LYTKPFHQR 546


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 201 YPGFPELARSDVSIYPSYTKLGLAYR 278
           +  F    R D +  P+YT LGL YR
Sbjct: 561 FSAFVSSLRKDPNYAPAYTSLGLYYR 586


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 217  SGKPGYSGTRLLISSGLFILQFICVFNGFLSKHI 116
            S    ++   LL+++ L + +F+C+ N F  +H+
Sbjct: 929  SNHKSHNNQSLLLAASLTLSKFMCLSNNFCMEHL 962


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 333  MKELHSFEKLQANA-LDGVRVHREFSQGILSHVIPPRRYMQKLT 461
            +KE++    +  NA L+ V     FS+G+L  V+PP++  + ++
Sbjct: 1185 LKEMYQIITMGGNAELELVDSLDPFSEGVLFSVMPPKKSWKNIS 1228


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 159 YNLFVFLTVSYQNISNSDC 103
           YN+  FL+V++QN    DC
Sbjct: 524 YNMLFFLSVNFQNPGLKDC 542


>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
           Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 390 VHREFSQGILSHVIPPRRYMQKLTTDPL----TPKERMRVEEIISGRVNFGQK 536
           V  ++ +G++  +  P   +QK   DP+    +P   ++   II  R+ F  +
Sbjct: 52  VGNQYMEGVVESLKKPLAVLQKTNADPVDVYSSPSHELKCCSIIRERIRFSSR 104


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 189 RVPLYPGFPELARSDVSI 242
           R PLYPG PE++    SI
Sbjct: 81  RQPLYPGIPEISEEIESI 98


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 270 AYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGVR-VHREFSQGILSH 425
           A  ++ +   HW     RKQ++K  H+      + ++ +  +  E SQ + ++
Sbjct: 222 ALDIIAQCHQHWKVSRDRKQYIKNFHNESVNNVDLINKINSLKEEVSQNVSNY 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,439
Number of Sequences: 5004
Number of extensions: 52374
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)