Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n02
(561 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121000-1|AAI21001.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 1.2
BC108668-1|AAI08669.1| 477|Homo sapiens TSC1 protein protein. 32 1.2
BC070032-1|AAH70032.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 1.2
BC047772-1|AAH47772.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 1.2
AL445645-4|CAH72112.1| 1164|Homo sapiens tuberous sclerosis 1 pr... 32 1.2
AF013168-1|AAC51674.1| 1164|Homo sapiens hamartin protein. 32 1.2
AB190910-1|BAD91314.1| 454|Homo sapiens tumor suppressor protein. 32 1.2
BC004213-1|AAH04213.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
BC004184-1|AAH04184.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
BC002383-1|AAH02383.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
AB003177-1|BAA19790.1| 209|Homo sapiens proteasome subunit p27 ... 31 2.1
AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rh... 30 6.4
>BC121000-1|AAI21001.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC108668-1|AAI08669.1| 477|Homo sapiens TSC1 protein protein.
Length = 477
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC070032-1|AAH70032.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC047772-1|AAH47772.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AL445645-4|CAH72112.1| 1164|Homo sapiens tuberous sclerosis 1
protein.
Length = 1164
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AF013168-1|AAC51674.1| 1164|Homo sapiens hamartin protein.
Length = 1164
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AB190910-1|BAD91314.1| 454|Homo sapiens tumor suppressor protein.
Length = 454
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 467
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC004213-1|AAH04213.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.5 bits (68), Expect = 2.1
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 207 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 386
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 387 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTPKE--RMRVEEIISGRVNFGQK*TYGF 551
H+E G PPR + + + P +P ++V++ I V FG T F
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEI---VEFGSVNTQNF 170
>BC004184-1|AAH04184.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.5 bits (68), Expect = 2.1
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 207 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 386
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 387 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTPKE--RMRVEEIISGRVNFGQK*TYGF 551
H+E G PPR + + + P +P ++V++ I V FG T F
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEI---VEFGSVNTQNF 170
>BC002383-1|AAH02383.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.5 bits (68), Expect = 2.1
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 207 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 386
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 387 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTPKE--RMRVEEIISGRVNFGQK*TYGF 551
H+E G PPR + + + P +P ++V++ I V FG T F
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEI---VEFGSVNTQNF 170
>AB003177-1|BAA19790.1| 209|Homo sapiens proteasome subunit p27
protein.
Length = 209
Score = 31.5 bits (68), Expect = 2.1
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 207 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 386
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 387 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTPKE--RMRVEEIISGRVNFGQK*TYGF 551
H+E G PPR + + + P +P ++V++ I V FG T F
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEI---VEFGSVNTQNF 170
>AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rho
GTPase, homolog 2 (C. elegans) protein.
Length = 1116
Score = 29.9 bits (64), Expect = 6.4
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Frame = +3
Query: 129 KKPLKTQINCKMNNPDEIKRRVPLYPGFPELARSDVSIYPSYTKLGLAY----RVVCRHR 296
K PLK N N+P + K V L PE+ ++ + + + KL +Y ++ C++
Sbjct: 841 KSPLKMSSNGCENDPGDSKYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNL 900
Query: 297 ---YHWAKVAQRKQ---FMKELHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKL 458
+ ++QR++ + + + A+ALD + H E +L + P +R K
Sbjct: 901 AVCFGPVLLSQRQEPSTHNNRVFTDSEELASALD-FKKHIEVLHYLL-QLWPVQRLTVKK 958
Query: 459 TTDPLTPKER 488
+TD L P+++
Sbjct: 959 STDNLFPEQK 968
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,518,233
Number of Sequences: 237096
Number of extensions: 1830596
Number of successful extensions: 2969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2969
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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