Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n02
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 283 TTR-YANPNFVYDGYMLTSDL 224
           TTR Y+NPNF YD Y +T D+
Sbjct: 300 TTRSYSNPNFAYDPYFITHDI 320


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3b protein.
          Length = 1271

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 291  HRYHWAKVAQRKQFMKELHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTDP 470
            H  +W +  ++ Q ++EL  FE L     D  +  R+F   IL  + PP  Y  K+  DP
Sbjct: 985  HCIYWIQKYRQAQ-VREL--FEHLANQTADKGKELRKFLSSILKEIHPPEDYCIKV-YDP 1040

Query: 471  LTPKER 488
            +  +ER
Sbjct: 1041 IGEEER 1046


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 291  HRYHWAKVAQRKQFMKELHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTDP 470
            H  +W +  ++ Q ++EL  FE L     D  +  R+F   IL  + PP  Y  K+  DP
Sbjct: 985  HCIYWIQKYRQAQ-VREL--FEHLANQTADKGKELRKFLSSILKEIHPPEDYCIKV-YDP 1040

Query: 471  LTPKER 488
            +  +ER
Sbjct: 1041 IGEEER 1046


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 375  LDGVRVHREFSQGILSHVIPPRRYMQKLTTDPLTPKERMRVEEIISGRVN 524
            ++G  +  E  Q I  +  PP + ++K    P+ PKE ++ +EI+S   N
Sbjct: 1028 IEGANMDSENQQNIFFN-FPPEKLVKK---PPVVPKEVVQEQEIVSQNTN 1073


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,552
Number of Sequences: 27780
Number of extensions: 295231
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)