Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m24
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594... 65 4e-11
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 44 1e-04
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242... 36 0.035
01_06_1618 - 38681729-38683989,38685577-38685796 30 1.3
08_02_0197 - 14150787-14151440 28 5.3
01_01_0381 - 2961422-2963917 28 5.3
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 28 7.0
07_03_1476 + 26798812-26798838,26799162-26799237,26799322-268000... 27 9.3
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 9.3
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 27 9.3
01_06_1574 + 38337669-38338196 27 9.3
>02_05_1313 -
35658599-35658683,35659231-35659313,35659394-35659489,
35659615-35659693,35659775-35659852,35659989-35660030,
35660435-35660532,35660628-35660747,35660840-35660926
Length = 255
Score = 65.3 bits (152), Expect = 4e-11
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Frame = +1
Query: 202 FLNTTNQFGNTATPKKTGRRAARTAPIVIRQ---ALHSGEEGVK-----IWGTEXXXXXX 357
F ++ N ++ TP K+ R A+ T P+ ++Q A SG G K + G E
Sbjct: 14 FTSSQNAAADSTTPSKS-RGASSTMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRL 72
Query: 358 XXXXXXXXMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
++T +++TI D TGR+ + W++ A E + VQ Y+ + G++K
Sbjct: 73 VGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAA---VQNGMYVSVIGSLKG 129
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCI 624
+ K AF I PVTD +T H+ QC+
Sbjct: 130 LQERKRATAFAIRPVTDYNEVTLHFIQCV 158
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/81 (24%), Positives = 43/81 (53%)
Frame = +1
Query: 385 QSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
+ T + +T+ D TG++ V W+ ++ + DTS +Q Y+++ N+ + K +A
Sbjct: 98 RDTDVCFTLDDSTGKIPLVRWITDQS-DTRDTS--YIQEGVYVKVQVNLMGFQAKKQGLA 154
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
I P+ + + H+ +C+H
Sbjct: 155 RSIRPINNFNEVVLHFIECMH 175
>02_05_0049 -
25423260-25423344,25423415-25423483,25424143-25424231,
25424315-25424407,25424516-25424594,25425557-25425657,
25425864-25425944,25426369-25426740
Length = 322
Score = 35.5 bits (78), Expect = 0.035
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 505 DYIQIYGNVKTNKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
DY+ + G +K +G + ++A+ + +T+ +T H+ C+H
Sbjct: 162 DYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVH 202
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 397 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 510
+T + D+TG+++ + W+D A V S PK Q + Y
Sbjct: 283 LTRFVVDVTGQIKFMTWVDSAAQWVLFWSEPKAQCDVY 320
>08_02_0197 - 14150787-14151440
Length = 217
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 300 QSLPDDYRCCPCRSTTSFF 244
+ LPDD+RC C + SFF
Sbjct: 149 EQLPDDWRCPTCGAAQSFF 167
>01_01_0381 - 2961422-2963917
Length = 831
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 397 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 510
+T D+ GR + +WLD + S+PKVQ + Y
Sbjct: 272 VTRNFIDVDGRNKQQVWLDSSQSWLTLYSNPKVQCDVY 309
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 357 SCKNQEH*NAKH*NNIYNPRYNREDEGCTLARPRGYGS*RYLIT 488
+C +E + KH N+++ RY R GC P G+ ++L T
Sbjct: 597 NCHFEESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQT 640
>07_03_1476 +
26798812-26798838,26799162-26799237,26799322-26800055,
26800397-26800546,26800659-26801042
Length = 456
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 405 ICYFSALHSNAPDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRCCPCRSTTSFFGCCRIS 226
+C+F L Y ++ + TPY F + SL + CP +S F ++S
Sbjct: 203 VCFFGRLDLVCLPKLEYIYWEIWFTPYAPLSFGSVPSLRELRLACPAQSD---FQGLKLS 259
Query: 225 KLICGV 208
K++ GV
Sbjct: 260 KVLQGV 265
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 LPFLLRSVRNCLVHCTTAVTRIVFN*QF*P 158
L +L +S NC++HC I+ N F P
Sbjct: 398 LSYLHQSCHNCIIHCDIKPENILLNASFVP 427
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 391 TKITYTIQDITGR------MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTK 552
T + Y + I GR A L L+ + TSSP Q +D ++YG+ N ++
Sbjct: 209 TTMAYPVSPIAGRRSNWRSFAASLNLEDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSR 268
Query: 553 VL 558
L
Sbjct: 269 KL 270
>01_06_1574 + 38337669-38338196
Length = 175
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 603 CNNVDISNWHYLKCHEHFCPFIRFHI 526
CN V+ N +L C CP+ +HI
Sbjct: 23 CNEVEKPNKRFLICAHSLCPYKFYHI 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,229
Number of Sequences: 37544
Number of extensions: 307234
Number of successful extensions: 798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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