Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m24
(630 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,... 57 4e-08
J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replicati... 56 8e-08
DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,... 56 8e-08
CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein. 56 8e-08
BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,... 56 8e-08
BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,... 56 8e-08
BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,... 56 8e-08
AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2... 56 8e-08
AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2... 56 8e-08
AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2... 56 8e-08
Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4, 3... 36 0.090
U24186-1|AAB08488.2| 261|Homo sapiens replication protein A com... 36 0.090
BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,... 36 0.090
BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,... 36 0.090
BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,... 36 0.090
BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,... 36 0.090
BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,... 36 0.090
AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A c... 36 0.090
>AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,
32kDa protein.
Length = 358
Score = 57.2 bits (132), Expect = 4e-08
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Frame = +1
Query: 142 TNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG- 309
T F+ Y + + GG+ + FG+ A KK+ RA P I Q L +
Sbjct: 91 TGGFESYGSSSYG---GAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATL 147
Query: 310 -EEGVKIWGTEXXXXXXXXXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTS 483
+E +I E T I Y I D+T M W+D + E+T
Sbjct: 148 VDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV 207
Query: 484 SPKVQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
P Y+++ G++++ + K L+AFKIMP+ D+ T H + I+
Sbjct: 208 VPP---ETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVIN 252
>J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replication
protein A 32-kDa subunit mRNA, complete cds. ).
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2,
32kDa protein.
Length = 278
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 26 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 85
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 86 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 142
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 143 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 172
>AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 18 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 77
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 78 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 134
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 164
>AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2,
32kDa protein.
Length = 179
Score = 56.4 bits (130), Expect = 8e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 GGFLNTTNQFGNTA---TPKKTGRRAARTAPIVIRQALHSG--EEGVKIWGTEXXXXXXX 360
GG+ + FG+ A KK+ RA P I Q L + +E +I E
Sbjct: 22 GGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIV 81
Query: 361 XXXXXXXMQSTKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 537
T I Y I D+T M W+D + E+T P Y+++ G++++
Sbjct: 82 GIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRS 138
Query: 538 NKGTKVLMAFKIMPVTDVXIITFHYFQCIH 627
+ K L+AFKIMP+ D+ T H + I+
Sbjct: 139 FQNKKSLVAFKIMPLEDMNEFTTHILEVIN 168
>Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>U24186-1|AAB08488.2| 261|Homo sapiens replication protein A
complex 34 kd subunit homolog Rpa4 protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
>AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A
complex 34 kDa subunit RPA4 protein.
Length = 261
Score = 36.3 bits (80), Expect = 0.090
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 564
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 565 FKIMPVTDVXIITFHYFQCIH 627
KI + D+ T H + ++
Sbjct: 143 LKIHVLEDMNEFTVHILETVN 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,218,269
Number of Sequences: 237096
Number of extensions: 1789613
Number of successful extensions: 3372
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -