Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m24
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -1

Query: 372 PDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRCCP---CRS-TTSFFGCCRISKLICGVK 205
           P S  Y H+   C P   +FF R  SL   Y C     C   +  +   CR  +    +K
Sbjct: 16  PCSMRYSHFGGICCPACASFFRRTVSLNIRYLCKKQNNCSGISKKYHIVCRACRYEKCIK 75

Query: 204 EATSRRIIIPH 172
           +A  +R ++ H
Sbjct: 76  KAGMKRSLVQH 86


>Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical
           protein F59B10.6 protein.
          Length = 105

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 110 LYYCCY*NSLQLTILTSTLKQCGMMILLEVASLTPQINLEIRQHP 244
           + YCCY N ++L+++   +++ G+    E+  L    N    ++P
Sbjct: 45  IMYCCYINKMELSLVEKKIEENGVARSKELQRLLDAYNKITAENP 89


>Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical
           protein Y41E3.4 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 167 KQCGMMILLEVASLTPQINLEIRQHPKKLVVERH 268
           K CG+ +++ +  +   +   I QH +K+V ER+
Sbjct: 106 KSCGVGVVVTIDDIEAAVTKVIGQHREKIVAERY 139


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 297 SLPDDYRCCPCRSTTSFFGCCRI-SKLIC 214
           S P  Y C P    + F  CCR+ S LIC
Sbjct: 318 SCPIGYSCAPSNQVSQFL-CCRLASSLIC 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,405
Number of Sequences: 27780
Number of extensions: 287965
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)