Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m24
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 324 FHTFFSRMQSLPDDYRCCP 268
           FHT     QSL    +CCP
Sbjct: 794 FHTDIGNSQSLAHQDQCCP 812


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 139 KTILVTAVVQCTKQFRTDLNRKGSMV*FF 53
           K I+    V  TKQ + + N+KG  + F+
Sbjct: 531 KAIIYGFNVNATKQIKDEANKKGVSLRFY 559


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 191  LEVASLTPQINLEIRQHPKKL 253
            LE   +TP++  E + HPK L
Sbjct: 1000 LEGVHVTPELIYEYQIHPKTL 1020


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 533 KRIKGQKCSWHLR*C 577
           K + G++C WH   C
Sbjct: 598 KYVAGEQCCWHCFNC 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,606
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)