Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m23
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.7  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   2.2  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   2.2  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   6.8  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    25   6.8  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   6.8  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    25   9.0  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.0  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 174 LSNSVMEHEIFITKHTVQEKTFYLKV-LWRWNPEELFYIYINKDNSSWSGEYSIQ 335
           L N V++H   I    +Q++   + + LW +NP E+    I+   +S S E  IQ
Sbjct: 91  LKNLVIDH---IASRDLQKRVLNILIDLWHFNPSEIEKSLIHLSTTSKSAETRIQ 142


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  QCIKVHKKYFNIYSGSVSVKIRKRLFDDFAL-SNSVMEHE 200
           QC++  K Y  ++S + ++K++KRL D   L S +  E+E
Sbjct: 279 QCVQYLKGYGIMFSPAETIKLKKRLRDAVGLWSKASTEYE 318


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 138 VKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLKVLWRWNPEELFYIY 290
           + I K++ D  A   +  E+E++++K    + T YL  L   NP+   Y Y
Sbjct: 212 LSIEKKVLDRVAFLETRAEYELYLSKMEEAKSTIYL--LLDRNPDNHQYYY 260


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 75  GQVQCI-KVHKKYFNIYSGSVSVKIRKRLFDD 167
           G  QCI  +++KY N+ S     ++ +++FDD
Sbjct: 16  GNRQCILSLYRKYSNVQSRKAEDQLLRQIFDD 47


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 306 SSWSGEYSIQSA---NKYREEYTDDSEEEFIENV 398
           SSW    SI S+   NK+ + +   ++EE+++NV
Sbjct: 54  SSWKKAISIFSSPVVNKHEDSFDSKTDEEYLQNV 87


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 261 WNPEELFYIYINKDNSSWSGEYSIQ-----SANKYREEYTDDSEEEFIENVKRAFRQ 416
           + P ELF +  NK   S + EY  +     +A+ Y+ E  D  +E+  E +K  F +
Sbjct: 392 FRPSELFELNENKSQRSLAEEYEEEFLKKSNADTYKSE-ADKKKEKEHEEIKALFSE 447


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 228 EKTFYLKVLWRWNPEELFYIYINKDNSSWSGEYSIQSANKY 350
           E+   +K + RW  E L    +N+D+   + + SI++  +Y
Sbjct: 139 ERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRY 179


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 291 INKDNSSWSGEYSIQSANKYREEYTDDSEEE 383
           +  D S W  EY    A++  EE+    EEE
Sbjct: 150 VTTDPSLWGHEYVRHLASEIEEEFASRQEEE 180


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 204 FITKHTVQEKTFYLKVLWRWNPEELFYIYINKDNSSWSGEYSIQSANK 347
           ++ K+ +     Y  +L ++ P+  +Y ++N+DN S + + +I   N+
Sbjct: 261 YVQKYQIVLDRQYDNILGQY-PKRDWYSFVNRDNRSLANDEAIDLLNR 307


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 276 LFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENV 398
           LFYI I  D   W G+   + A +      D    + IEN+
Sbjct: 119 LFYILIFHDEDEWGGDLRRECAEETITRLVDLYVSKAIENL 159


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 288 YINKDNSSWSGEYSIQSANKYREEYTDDSEEE 383
           Y ++ + S  GEY   ++    EE  D S+EE
Sbjct: 674 YASETSESSEGEYETSTSESEDEETDDTSQEE 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,649
Number of Sequences: 5004
Number of extensions: 47518
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)