Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m23
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 32 0.32
08_02_0922 + 22646822-22647742 32 0.43
05_06_0196 + 26293889-26294122,26294317-26294375,26294454-262945... 31 0.99
08_02_1592 + 28078055-28078966 29 4.0
08_01_0793 - 7685702-7686955 29 4.0
04_03_0187 + 12436934-12437108,12438020-12439044 29 4.0
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 27 9.2
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 18 IVVILNQKKVKPHYLLYLYGQVQCIKVHKKYFNIYSGSVSVKIRKRLFDDFAL-SNSVME 194
++ I+ ++ H+LLY+ G + ++ HK YF S VS K+ L F++ S
Sbjct: 573 LLSIIQNLGMQMHWLLYV-GILTKLRRHKAYFTRSSFVVSTKLSPELSAGFSVWSYEGFF 631
Query: 195 HEIFITKHTVQEKTFYLKVLWRWN 266
I+ H Q + F+ + W N
Sbjct: 632 SRKLISGHWSQMQLFFCAIWWLTN 655
>08_02_0922 + 22646822-22647742
Length = 306
Score = 31.9 bits (69), Expect = 0.43
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = +3
Query: 81 VQCIKVH----KKYFNIYSGSVSVKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLK 248
VQC K H KK + G+ S ++R+ ++ + +ME I K EK F L+
Sbjct: 117 VQC-KTHWGGVKKEIGKFCGAYS-RVRRTFRSGYS-DDMIMEKAHIIFKSENNEKPFTLE 173
Query: 249 VLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENVKR 404
+WR ++ + + +++S + I Y D+EEE KR
Sbjct: 174 YMWRELKDQPKWRRVLEEDSK-NKRTKISETGAYTSSSNQDTEEETSRKEKR 224
>05_06_0196 +
26293889-26294122,26294317-26294375,26294454-26294554,
26294638-26294717,26294856-26294906,26295225-26295299,
26295386-26295463,26295700-26295756,26296226-26296296,
26296395-26296494,26296574-26296678,26296763-26296825,
26296940-26297062,26297129-26297193,26297352-26297358
Length = 422
Score = 30.7 bits (66), Expect = 0.99
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +3
Query: 24 VILNQKKVKPHYLLYLYGQVQCIKVHKKYFNIYSGSVSVKIRKRLFDDFALSN----SVM 191
V+ K K + L G V C+ VH Y IYS S + ++ D ++S +
Sbjct: 60 VVGQDKAKKVNETSLLVGVVLCVAVHNHYKRIYSESSNCSMKSSACGDVSMSGDDDIELE 119
Query: 192 EHEIFITKHTVQEKTFYLKVLWRW 263
+ I + T KT K L R+
Sbjct: 120 KSNILLIGPTGSGKTLLAKTLARF 143
>08_02_1592 + 28078055-28078966
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +3
Query: 81 VQCIKVH----KKYFNIYSGSVSVKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLK 248
VQC K H KK + G+ S + R+ F+ + +ME + K +KTF L+
Sbjct: 92 VQC-KTHWGGVKKDIAKFCGAYS-RARRTWSSGFS-DDMIMEKAHALYKSENNDKTFTLE 148
Query: 249 VLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENVKR 404
+WR ++ + I +++S + I + Y ++EEE KR
Sbjct: 149 YMWRELKDQPKWRRILEEDSK-NKRTKISESGAYTSSSNQETEEETSRKEKR 199
>08_01_0793 - 7685702-7686955
Length = 417
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +3
Query: 81 VQCIKVH----KKYFNIYSGSVSVKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLK 248
VQC K H KK + G+ S + R+ F+ + +ME + K +KTF L+
Sbjct: 206 VQC-KTHWGGVKKDIAKFCGAYS-RARRTWSSGFS-DDMIMEKAHALYKSENNDKTFTLE 262
Query: 249 VLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENVKR 404
+WR ++ + I +++S + I + Y ++EEE KR
Sbjct: 263 YMWRELKDQPKWQRILEEDSK-NKRTKISESGAYTSSSNQETEEETSRKEKR 313
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +3
Query: 81 VQCIKVH----KKYFNIYSGSVSVKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLK 248
VQC K H KK + G+ S + R+ F+ + +ME + K +KTF L+
Sbjct: 188 VQC-KTHWGGVKKDIAKFCGAYS-RARRTWSSGFS-DDMIMEKAHALYKSENNDKTFTLE 244
Query: 249 VLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENVKR 404
+WR ++ + I +++S + I + Y ++EEE KR
Sbjct: 245 YMWRELKDQPKWRRILEEDSK-NKRTKISESGAYTSSSNQETEEETSRKEKR 295
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 27.5 bits (58), Expect = 9.2
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +3
Query: 81 VQCIKVH----KKYFNIYSGSVSVKIRKRLFDDFALSNSVMEHEIFITKHTVQEKTFYLK 248
VQC K H KK + G+ S + R ++ + +ME + K EK F L+
Sbjct: 469 VQC-KTHWGGVKKEIGKFCGAYS-RARSTFSSGYS-DDMIMEKAHIMFKSENNEKPFTLE 525
Query: 249 VLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEE 383
+WR ++ + + +++S + I + Y D+EEE
Sbjct: 526 YMWRELKDQPKWRRVLEEDSK-NKRTKISESGAYTSSSNQDTEEE 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,227
Number of Sequences: 37544
Number of extensions: 230678
Number of successful extensions: 554
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -