Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    33   0.027
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    32   0.081
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         32   0.081
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   7.1  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   7.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   9.3  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 135 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLT 287
           CIFC I         L E      F DI P S+ H L IPK H   +  L+
Sbjct: 3   CIFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELS 53


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = +3

Query: 177 ILYEDDEVCVFRDIKPASRFHILTIPK-RHIEDVKSLTSADKELQKSENSPPHIEWLRSH 353
           ++Y DD+V + RD+ P S+ H+L + +  H+  V  L    K     E     + +++  
Sbjct: 51  VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKL---VSYVQGD 107

Query: 354 MDMIV*AMPVNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTI 506
           +  ++     N    +S++L   N       + G+H  P  +  HLH+ T+
Sbjct: 108 LSGLIFDEARN---CLSQQL--TNEALCNYIKVGFHAGPSMNNLHLHIMTL 153


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 168 GTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAD 296
           G+++ Y       F ++KP    H+L IP+R +  +K LT ++
Sbjct: 13  GSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSE 55


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 536 SNESHLGFRRYSMQMQMF-D*TKRWPVIPKACIF 438
           S  SHL  +  +  +Q+F + +KRW + P+ CI+
Sbjct: 109 SKYSHLQEKNRTSFLQVFKERSKRWFLFPRLCIY 142


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 532 MNPISDSGAIVCRCKCLTERNGGQ*YPKRASS 437
           ++ ++D+ A +CR  C   RNG    PK   S
Sbjct: 33  IDEVNDAAAALCRVYCYLSRNGLLKRPKEDDS 64


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 410 LSRYGHHSVNWHCSHDHIHVRPQPL 336
           LSRY H S+NW   +D I   P PL
Sbjct: 230 LSRYMHRSLNWKKLYD-IGFAPFPL 253


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 470 RWPVIPKACIFNTQIV 423
           RWP +P+A I+N+  +
Sbjct: 241 RWPTVPQAVIYNSPYI 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,421
Number of Sequences: 5004
Number of extensions: 53581
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)