Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m20
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 54 7e-08
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 43 2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 42 6e-04
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 36 0.028
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 31 1.0
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 29 2.4
11_01_0459 + 3546101-3548771,3548871-3549238 29 4.2
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 4.2
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981... 28 7.3
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 28 7.3
03_06_0040 + 31240164-31241102,31241280-31241897 27 9.7
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = +3
Query: 381 VNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIA 509
V+ M+++ R+LL+++ + E+ RFG+H PPF SV HLHLH +A
Sbjct: 83 VSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVDHLHLHCLA 125
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 135 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKS 281
C+FC I + LYEDD D KP S H L IPKRH +++
Sbjct: 73 CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +3
Query: 138 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK 299
IF I K + ++YED++V FRDI P + H+L IPK I D LT DK
Sbjct: 46 IFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK--IRD--GLTGLDK 95
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 35.9 bits (79), Expect = 0.028
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 138 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPK 257
+F I K + ++++D++V FRDI P + HI+ IPK
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK 234
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 243 LTIPKRHIEDV-KSLTSADKELQKSENSP 326
LT+ + H E++ K+LT D+ELQK++N P
Sbjct: 258 LTLYEEHQEELEKALTPTDQELQKNDNRP 286
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 90 TRTTGFLALKLTCFFFYYH*LFTDW 16
T+ GFLA +TC F + + + TDW
Sbjct: 113 TQEAGFLASAVTCIFCWIYMIVTDW 137
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 427 LFLDSNSLDMDIILLTGIAHTIISM*DRNHSI*GGLFSDF--CSSLSAL 287
LFLD+NS +I L G H + ++ N+++ G + DF CSSL AL
Sbjct: 103 LFLDTNSFTGEIPLSLGHLHHLRTIYLSNNTLEGAI-PDFTNCSSLKAL 150
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 393 MSISRELLSKNNLSIEDARFG 455
M +SR+ LS NN+S +D FG
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFG 547
>04_03_0144 +
11796550-11797178,11797808-11797902,11798053-11798102,
11798382-11799293
Length = 561
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 328 GGLFSDFCSSLSALVKLLTSSICLLGIVRI*KRLAGLMSRKT 203
G L+ CS L++LV+ T +C IVR K + +S++T
Sbjct: 365 GSLYQICCSCLNSLVEHFTEDLCSDKIVRDSKPMIERVSKQT 406
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -1
Query: 437 NTQIVFRQQLSRYGHHSVNWHCSHDHIHVRPQPL 336
+TQ+ FR L Y W C HD P PL
Sbjct: 220 DTQVAFRVNLGDY-----QWSCDHDRHATHPSPL 248
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 384 NRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 497
NR S+ L + N S+ A +G HW R + +HL
Sbjct: 98 NRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,327
Number of Sequences: 37544
Number of extensions: 318864
Number of successful extensions: 635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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