Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m17
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    29   0.58 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   3.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.2  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 218 PIMANPKRLHYLMRKAMKNLKRKN 289
           PI ANPK L + +  A KNLK K+
Sbjct: 860 PISANPKALSFALTYAKKNLKDKS 883


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -2

Query: 340  LSQNLFYGLLVS--AELVRIFSLQIFHRLS-HQVMEPLWIGHYRPARPLSCLSLSQERFQ 170
            LS  +FY       A ++R + + ++H    H  + P ++    P      LSL    FQ
Sbjct: 1246 LSSAIFYSAWNQCIAGIIRRYPIDVYHINDYHGALAPCYL---LPNVIPCVLSLHNAEFQ 1302

Query: 169  GCYS*LQQSCLN*ICFVIGISTVINT 92
            G +    Q+  N +C V  IST I T
Sbjct: 1303 GLWPLRTQAEKNEVCAVYNISTKICT 1328


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 175 FQGCYS*LQQSCLN*ICFV 119
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 175 FQGCYS*LQQSCLN*ICFV 119
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 175 FQGCYS*LQQSCLN*ICFV 119
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 233 PKRLHYLMRKAMKNLKRKNPNQLSRN 310
           PK    L +K  KNL RK  N+L RN
Sbjct: 169 PKPSCPLFKKMQKNLSRKLDNELERN 194


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 175 FQGCYS*LQQSCLN*ICFV 119
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +1

Query: 328  NFEKDVVYLYQFSRTPLLPSTSPYCL-KVETWLRLAGIK--YENVEHHAKYRS--KKGQL 492
            NF   +  +   +  P+    + Y L K E  + L+G++   E  ++ + YR+  +K +L
Sbjct: 836  NFSTLMSIVSALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKNFSTYRALLRKAEL 895

Query: 493  PFVELNGEEIADSTFI 540
            P V   G  ++D TFI
Sbjct: 896  PCVPFLGVILSDLTFI 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,141
Number of Sequences: 5004
Number of extensions: 47799
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)