Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m17
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.63 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 460 HAKYRSK-KGQLPFVELNGEEIADST 534
           H KYR + + +LP++EL  + I+DST
Sbjct: 332 HPKYRLELQKRLPWLELQEKPISDST 357


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 493 AVGLFWNDIWHDALRSR 443
           A GL W +IW D+L ++
Sbjct: 26  ASGLRWFEIWRDSLPTK 42


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 376  LLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQ 489
            L  S S   + VE  L   G+K      HA   +++G+
Sbjct: 1118 LTSSNSGQLISVENLLAQKGLKLATTASHANQLNRQGK 1155


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 221 IMANPKRLHYLMRKAMKNLKRKN---PNQLS 304
           I+ N KR++   R  +KN+ + N    NQLS
Sbjct: 18  ILKNDKRIYLSPRTPIKNVYKNNIETKNQLS 48


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 513 RRNSR*HFHHQRSFRE 560
           +RN+  H HH   FR+
Sbjct: 2   KRNTTNHSHHDERFRQ 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,079
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)