Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m11
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 55 9e-09
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 40 2e-04
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 40 3e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 37 0.002
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 36 0.005
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 35 0.011
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 35 0.011
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 33 0.032
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 32 0.057
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 32 0.075
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 30 0.30
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 0.40
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 29 0.53
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.53
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 1.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.1
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 2.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.5
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 6.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 8.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 54.8 bits (126), Expect = 9e-09
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Frame = +2
Query: 248 YVCDY--CNRIFTRKYNLQTHIENLHVNS---SCHCEVCGKRFGTTTGFHLHLSAGHNRY 412
+VCDY C++ F RK +L+ H + H N SCH + C +F T H+ H +
Sbjct: 53 FVCDYTGCSKAFYRKSHLKIH-KRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEV-HRKP 110
Query: 413 GQPLPECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLH 589
+ C F++ Q + SH+ H L + C F T + L+ HVN H
Sbjct: 111 KPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAH 169
Score = 53.2 bits (122), Expect = 3e-08
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Frame = +2
Query: 239 LLDYVCDY--CNRIFTRKYNLQTHIENLH---VNSSCHCEVCGKRFGTTTGFHLHLSAGH 403
LL Y C Y C F K LQ H+ H ++ SC E C G L H
Sbjct: 141 LLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQ---NH 197
Query: 404 NRYGQPLPECDLCGRIFTRKQNIVSHMITVHLQGLGNE--IRCRF--CSKTFTTGRNLKR 571
R +P C +CGR F ++ H++ +H L C C K+FT LK+
Sbjct: 198 IREAH-VPSCSICGRQFKTAAHLRHHVV-LHQTTLEERKTYHCPMEGCKKSFTRSSALKK 255
Query: 572 HVNLLHNPNV 601
H++++H N+
Sbjct: 256 HISVIHEGNM 265
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 263 CNRIFTRKYNLQTHIENLHV-NSSCHCEVCGKRFGTTTGFHLHLSAG 400
C + FTR L+ HI +H N + HC+ CG +FG HL G
Sbjct: 243 CKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERG 289
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 SMSLLDYVCDY--CNRIFTRKYNLQTHIENLHVN-SSCHCEVCGKRF 361
S S +YVC + CN+ FTR YNL++H+ N H N C +C K F
Sbjct: 564 SKSQGNYVCTFAGCNKRFTRAYNLKSHM-NTHTNYRPFQCSICKKSF 609
Score = 31.9 bits (69), Expect = 0.075
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 440 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNL 583
C + FTR N+ SHM T H +C C K+F + +RH L
Sbjct: 577 CNKRFTRAYNLKSHMNT-HTN--YRPFQCSICKKSFARQHDKRRHEQL 621
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 458 RKQNIVSHMITVHLQGLGNEIRCRF--CSKTFTTGRNLKRHVN 580
+ +N S + GN + C F C+K FT NLK H+N
Sbjct: 551 KSENSSSSKAKSESKSQGNYV-CTFAGCNKRFTRAYNLKSHMN 592
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLH 388
+VC C++ F R +L+ HI +LH + +CGKRF H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQH 469
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 290 NLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQN 469
N +T + S C C K+F + H+ + H P +CG+ F+R+ N
Sbjct: 409 NRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHT---SEKPFVCICGKRFSRRDN 465
Query: 470 IVSH 481
+ H
Sbjct: 466 LRQH 469
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 509 GNEIRCRFCSKTFTTGRNLKRHVNLLH 589
G C CSK F +L+RH+ LH
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 37.1 bits (82), Expect = 0.002
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 248 YVCDY--CNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQP 421
YVC Y CN+ RKYN+++HI+ + C++C F HL N G+P
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHEN--GRP 500
Query: 422 LPECDLCGRIFTRKQNIVSH 481
C+ C + F R + H
Sbjct: 501 Y-VCE-CLKRFNRLDALNRH 518
Score = 33.9 bits (74), Expect = 0.019
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 440 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHN 592
C + RK N+ SH+ T HL RC C F +LKRH+ + N
Sbjct: 450 CNKRIARKYNVESHIQT-HLSD--RPYRCDLCKAGFVRHHDLKRHLRIHEN 497
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 257 DYCNRIFTRKYNLQTHIENLHVNSS--CHCEVCG--KRFGTTTGFHLHLSAGHNR 409
+ CN +F+R Y+L H + +H + CE+CG + F HL H R
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHGR 637
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 434 DLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFC--SKTFTTGRNLKRHVNLLH 589
++C +F+R +++ H T+H + RC C + F+ L RH+ + H
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAK-TRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 34.7 bits (76), Expect = 0.011
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 269 RIFTRKYNLQTHIENLHVNSSCHCEVCGKR-FGTTTGF----HLHLSAGHNRYGQPLPEC 433
R+ + ++ HI N +C + C ++ T+ F HL G + +PEC
Sbjct: 54 RLISNINSILDHIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPEC 113
Query: 434 DLCGRIFTRKQNIVSHMITVH 496
D R FTR + HM TVH
Sbjct: 114 D---RSFTRSDALAKHMRTVH 131
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 431 CDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHN 592
CD C + FTR +N+ H H + I C +C LKRH+ HN
Sbjct: 33 CDQCAKRFTRHENLTRHK-ACHSK--AEPIPCPYCEIKCKRKDLLKRHIQRFHN 83
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/86 (24%), Positives = 35/86 (40%)
Frame = +2
Query: 239 LLDYVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQ 418
++D+V + + + K L T + C+ C KRF H A H++ +
Sbjct: 1 MVDHVSENSTNVLSAKRKL-TEPSLIDSKRVFPCDQCAKRFTRHENLTRH-KACHSK-AE 57
Query: 419 PLPECDLCGRIFTRKQNIVSHMITVH 496
P+P C C RK + H+ H
Sbjct: 58 PIP-CPYCEIKCKRKDLLKRHIQRFH 82
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 33.1 bits (72), Expect = 0.032
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 404 NRYGQPLPECDL--CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHV 577
+R G P C C + FTRK+++ H T H C FC++ F L RHV
Sbjct: 19 HRLGDPRFYCTYPDCPKSFTRKEHLRRHERT-HENV--KAFSCSFCNRAFARSDVLNRHV 75
Query: 578 NLLH 589
+H
Sbjct: 76 QQMH 79
Score = 29.9 bits (64), Expect = 0.30
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHV 322
+ C +CNR F R L H++ +H+
Sbjct: 56 FSCSFCNRAFARSDVLNRHVQQMHL 80
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 32.3 bits (70), Expect = 0.057
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 428 ECDL--CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLH 589
+CD C + FTRK++ H + H C CS +FT L RHVN H
Sbjct: 18 KCDFQGCTKSFTRKEHARRHFRS-HTNS--KAFICPHCSSSFTRSDVLNRHVNQKH 70
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHVNSS 331
++C +C+ FTR L H+ HV +
Sbjct: 47 FICPHCSSSFTRSDVLNRHVNQKHVKQN 74
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.9 bits (69), Expect = 0.075
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 428 ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHV 577
EC C R+F R+++ V H I H E C K FT L RHV
Sbjct: 5 ECPFCKRVFHRQEHQVRH-IRSHTGEKPFECSYPSCKKRFTRRDELIRHV 53
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHVNS---SCHCEVCGKRF 361
Y C +C R+F R+ + HI + H C C KRF
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRS-HTGEKPFECSYPSCKKRF 43
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRF 361
+ C C + Y +QT + + + C C VCG R+
Sbjct: 253 FTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 248 YVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTG 376
YVC+ C R F R +L+ HI + H N C + G TG
Sbjct: 70 YVCETCTRAFARLEHLKRHIRS-HTNEKPF--TCSEIDGLPTG 109
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 29.1 bits (62), Expect = 0.53
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 287 YNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLH-LSAGHNR 409
+N + + + +CEVC K FG T F H S HN+
Sbjct: 228 HNAEAEKDGKDSTEAFYCEVCQKFFGKITVFEAHKKSKAHNK 269
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 29.1 bits (62), Expect = 0.53
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +2
Query: 467 NIVSHMITVHLQGLGN--EIRCRFCSK 541
+I+S M T+ + G+G+ E+RCR C+K
Sbjct: 1147 SIISIMSTISMNGVGSASEVRCRSCAK 1173
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 419 PLP-ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNP 595
P P +C LC + F R ++ H+ T H + C+K F+ L RH + N
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRT-HTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNA 81
Query: 596 N 598
N
Sbjct: 82 N 82
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 386 HLSAGHNRYGQPLPECDLCG 445
HL GQPLP+C +CG
Sbjct: 813 HLGKSCPHCGQPLPKCSVCG 832
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 323 NSSCHCEVCGKRFGTTTGFHLHLSAGH 403
N CEVC KR+ G H + H
Sbjct: 396 NKPYRCEVCSKRYKNLNGLKYHRTHSH 422
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 512 NEIRCRFCSKTFTTGRNLKRHVNLLHN 592
+E C FC TFT ++L H HN
Sbjct: 56 HEFCCLFCDSTFTCLKDLWSHCKEAHN 82
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 SAPPPASTSICQP-GTIVTVNRCPNATSAAGSSLGN 464
+AP PA T + G N NAT GS GN
Sbjct: 484 TAPKPAGTGLFGGLGAGANTNTATNATGTGGSLFGN 519
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 194 KLIDTMNQNQNMSMSLLDYVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCG 352
+L+ T+ YVC +CN+ F+ ++ + + N + C VCG
Sbjct: 118 QLVKTVEDRMRNDFDSKGYVCPFCNKKFS-SLDVLSLVTN---EGTFACNVCG 166
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 405 IVTVNR-CPNATSAAGSSLGNR 467
++T N+ NA SAAG LGNR
Sbjct: 802 VMTTNQDAENALSAAGKQLGNR 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,712
Number of Sequences: 5004
Number of extensions: 51163
Number of successful extensions: 192
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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