Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m09
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.088
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    29   0.82 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   7.7  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
 Frame = +1

Query: 304 SFSENEEYIKSCPSVDQENMTECS------SLLYPCITCNRSIDCRYG-GFYNYTCTVKP 462
           SF ++ ++++ CP+ D E   EC       S + P +TCN      +G G  N+  T+ P
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGKQFCFGCGHDNHQPTICP 265

Query: 463 KVVCQGLKTFNKSSMCRFCYQTDKWEHRC----EQKANCNSL 576
            V     K  + S    + +   K   +C    E+   CN +
Sbjct: 266 LVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHM 307


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 339 TTFYVFFILTKTYTFVI*ITFYFILFTMKIHVIISHIGDMYC 214
           T FY  F+L      +  I++YF+L  + +++    +G +YC
Sbjct: 154 TGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYC 195


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 168 KHSRLFYFDFISNNEHNTCHRY 233
           KH ++ Y DF+  ++ +TC RY
Sbjct: 26  KHDKVDYKDFVRRDDGDTCLRY 47


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = -3

Query: 169 LYVKAEFYACWKSKHFFFHRI*VSYKCSI*CYDLRIVINSFSIS 38
           +YV  +F++ W ++H FF  + ++ +  +  + +  ++N FS++
Sbjct: 572 VYVIVDFFSLWTTRHKFFRFLLLTVQSLV--FAIEKLVNFFSMA 613


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 161 KGRVLCMLEIKAFLLPSNIGILQMLYIML*FTNSY 57
           +GR++CM++ K  LL +N   L +L++ L  T S+
Sbjct: 286 RGRLVCMVKAKKLLLHAN--DLYLLFLSLFRTQSF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,262
Number of Sequences: 5004
Number of extensions: 56955
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)