Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m06
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   0.82 
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   1.9  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   4.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S...    25   4.4  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   7.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    24   7.7  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    24   7.7  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 326  FMGPEVTIPGNGLSRWCR 273
            F GPEVT+ GN +  +CR
Sbjct: 1294 FTGPEVTVTGNMIEDFCR 1311


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 227 FVKLFLMKHHN*TSHIYFPRPYLPAQWTFWK 135
           F++ F +KH    +H+Y   P  P   T W+
Sbjct: 118 FIETFYVKHTG--AHVYISNPTWPVHRTLWE 146


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 LSRYYFEVYTGVDTTETDHCLEWLPRGP*RATF 337
           L  + FE Y GV+ + T    +WL  G    TF
Sbjct: 51  LMAHCFETYNGVEKSGTQCVADWLKVGLLAVTF 83


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 278 CRHRYKLRNNTLKVCKIFVKLFLMKHHN 195
           C   ++L NN L V   F+K++L++  N
Sbjct: 112 CLKLFRLNNNFLAVTGTFLKIYLIRISN 139


>SPAC750.07c |||S. pombe specific GPI anchored protein family
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 LSRYYFEVYTGVDTTETDHCLEWLPRGP*RATF 337
           L  + FE Y GV+ + T    +WL  G    TF
Sbjct: 51  LMAHCFETYNGVEKSGTQCVADWLKVGLLAVTF 83


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 147 DFLEDPEQLRSVALFHLCTFTDTKQLINHRYYKFKP 40
           D++ +      +AL    T T    ++NH YY F+P
Sbjct: 133 DYVRNGSSSGIIALSKAETDTYWNAILNHDYYDFRP 168


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 AYFQGIISKFIPVSTPPRQTIAWNGYLGAHKG 329
           AY  G+I  F    +P R   +W+G+  +H G
Sbjct: 701 AYTTGMIYVFDVSESPWRLLKSWHGHKASHNG 732


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 189 VPYLFSSTISASTVDFLEDPEQLRSVALFHLCTFTDTKQL 70
           +P++FSS  ++ +V  L  P Q     LF+  +  +TK+L
Sbjct: 545 IPFIFSSYSNSQSVPLLPCPTQRH--LLFNTSSTDNTKEL 582


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 134 SSKKSTVLADMVEENKYGTFSCDVSSKKV*QKSCILS 244
           SSKK     D+VE  +YG+ S +     +    C+L+
Sbjct: 548 SSKKDGNFDDLVERRQYGSLSSNAVLMPMLLPLCVLT 584


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 260 VYTGVDTTETDHCLEWLPR 316
           +Y+ +DT    H   W+PR
Sbjct: 226 IYSDIDTAPLKHINNWIPR 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,119
Number of Sequences: 5004
Number of extensions: 34904
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)