Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24m06
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical pr... 31 0.41
AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein p... 31 0.41
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 30 0.54
Z81571-3|CAB04613.1| 352|Caenorhabditis elegans Hypothetical pr... 29 1.2
U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 28 2.2
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 27 6.7
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 27 6.7
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 27 6.7
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr... 26 8.8
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 26 8.8
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 26 8.8
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 26 8.8
>Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical
protein C04G2.7 protein.
Length = 289
Score = 30.7 bits (66), Expect = 0.41
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 128 SGSSKKSTVLADMVEENKYGTFSCDVSSKKV*QKSC---ILSRYY 253
+G TV A +VE +++GT CD+S + C IL RYY
Sbjct: 42 NGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYY 86
>AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein
protein.
Length = 289
Score = 30.7 bits (66), Expect = 0.41
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 128 SGSSKKSTVLADMVEENKYGTFSCDVSSKKV*QKSC---ILSRYY 253
+G TV A +VE +++GT CD+S + C IL RYY
Sbjct: 42 NGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYY 86
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 30.3 bits (65), Expect = 0.54
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 128 SGSSKKSTVLADMVEENKYGTFSCDVSSKKV*QKSC---ILSRYY 253
+G T+ A +VE +++GT CD+S + C IL RYY
Sbjct: 104 NGRPLPDTIRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYY 148
>Z81571-3|CAB04613.1| 352|Caenorhabditis elegans Hypothetical
protein M01G12.4 protein.
Length = 352
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 153 TVDFLEDPEQLRSVALFHLCTFTDTKQLINHRYYKFKP 40
+VD+ D E+ S AL LC TD L++ Y F P
Sbjct: 6 SVDYFYDEEEDNSTALV-LCQLTDKISLVSMTLYMFSP 42
>U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate
filament, d protein1, isoform b protein.
Length = 465
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 117 NVTARDLPKSPLCWQIWSRKINMG 188
++ RD K P CW I+ RK+ G
Sbjct: 434 SLNVRDTHKIPPCWYIFGRKVKFG 457
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 216 KFDKNLAYFQGIISKFIPVSTPPRQTIAWNGYLGAHKGPHFFNLFI 353
+F ++ Y + + + +P S + ++ G LG H G H F +F+
Sbjct: 135 RFRRSELYLE-YLEELLPRSYAEKWAQSFEGLLGNHVGRHHFRIFL 179
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 216 KFDKNLAYFQGIISKFIPVSTPPRQTIAWNGYLGAHKGPHFFNLFI 353
+F ++ Y + + + +P S + ++ G LG H G H F +F+
Sbjct: 141 RFRRSELYLE-YLEELLPRSYAEKWAQSFEGLLGNHVGRHHFRIFL 185
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 216 KFDKNLAYFQGIISKFIPVSTPPRQTIAWNGYLGAHKGPHFFNLFI 353
+F ++ Y + + + +P S + ++ G LG H G H F +F+
Sbjct: 214 RFRRSELYLE-YLEELLPRSYAEKWAQSFEGLLGNHVGRHHFRIFL 258
>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
protein F10F2.2 protein.
Length = 1343
Score = 26.2 bits (55), Expect = 8.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 93 CTNETKLLNVTARDLPKSPLCW 158
CTN TK++N + + +P S + W
Sbjct: 825 CTNVTKVVNPSLKAVPGSKILW 846
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 183 YLFSSTISASTVDFLEDPEQLRSVALFHLC 94
Y+ ++S+ + FLE+ Q+R V + LC
Sbjct: 1390 YMNEKSVSSEAIGFLEELRQMRGVNIDALC 1419
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 183 YLFSSTISASTVDFLEDPEQLRSVALFHLC 94
Y+ ++S+ + FLE+ Q+R V + LC
Sbjct: 1428 YMNEKSVSSEAIGFLEELRQMRGVNIDALC 1457
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 183 YLFSSTISASTVDFLEDPEQLRSVALFHLC 94
Y+ ++S+ + FLE+ Q+R V + LC
Sbjct: 1390 YMNEKSVSSEAIGFLEELRQMRGVNIDALC 1419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,812
Number of Sequences: 27780
Number of extensions: 192502
Number of successful extensions: 517
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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