Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m05
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical p...    36   0.014
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    33   0.13 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    27   6.3  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    27   6.3  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    27   6.3  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      27   6.3  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical
           protein F53C11.9 protein.
          Length = 80

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 179 DANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDAC 322
           D  +   RTC+NP    M      +RC+C    V+D  T  C+DL  C
Sbjct: 31  DCGSPCDRTCENPN--PMCIQMCKARCECKQGFVVDSNTKKCIDLKKC 76


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 203 TCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDAC 322
           TCDN    E    C  + C C   LV D  TG CV+ + C
Sbjct: 93  TCDNENP-ECDLVCMTNVCQCKKGLVRDSATGKCVEKNKC 131


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +2

Query: 125  KRCVSYCPRLMHPYHTRCDANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLC 304
            K+C +   R        C    +   +C + +IY    +   S C+C      ++E+  C
Sbjct: 1662 KKCTNPLERSCEDVEKFC--GRVDHVSCLSVRIYNGSLS---SVCECEPGFRFEKESNSC 1716

Query: 305  VDLDACQ 325
            VD+D C+
Sbjct: 1717 VDIDECE 1723


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 155  MHPYHT-RCDANTISQRTCDN--PQIYEMGYTCGWSRCDCNGD---LVLDEETGLCVDLD 316
            + PY T  CD  T      D   P  Y + +  G+  C C+     ++LD   G CVD D
Sbjct: 854  IQPYDTFECDCTT-DPNFIDPCLPHGYYVQHN-GFYSCQCDVGYKYVLLDSNVGKCVDRD 911

Query: 317  ACQLKN 334
             C+ K+
Sbjct: 912  ECEEKS 917


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 236 YTCGWSRC---DCNGDLVLDEETGLCVDLDACQ 325
           +TC   R    DC GDLV ++ TG C   + C+
Sbjct: 451 FTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 371
           VDG+D+ A ++      Q     W LA++K     NL Q +LT
Sbjct: 313 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 355


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 371
           VDG+D+ A ++      Q     W LA++K     NL Q +LT
Sbjct: 313 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 355


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 VDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESLT 371
           VDG+D+ A ++      Q     W LA++K     NL Q +LT
Sbjct: 358 VDGMDMRAPMMTTGLSAQILAHVWALADIKKCGQLNLEQFALT 400


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 527 FLTLINYFYYISQKHIFFLILLSKYHKTKT-KLFTFV 420
           ++  I Y Y++ +K IFFL+ L  +   K   +F+++
Sbjct: 152 WIVFIGYAYFLLEKVIFFLMCLRDFEAAKVFYMFSYI 188


>U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical
           protein K06A9.2 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 173 RCDANTISQRTCDNPQIYEMGYTCGWSRCDCNGDLVLDEETGLCVDLDACQLKN 334
           R  A+ +    C  P    + Y  G ++   +G++V + +  +C+DLD   LKN
Sbjct: 378 RTGASLVDSSMCLTPDNKYL-YVTGTTKRSVDGEIVFEVKP-ICLDLDTMVLKN 429


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
           protein F32B5.7 protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 290 LRLVPNHHCNHI*TIHMYNPFRKFVDCRKSFEKLCSHHIL-CDTDASNVDSTIR 132
           L ++P    + +   HM +P     DC K   K+  H +L  D      DS++R
Sbjct: 108 LNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVR 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,336
Number of Sequences: 27780
Number of extensions: 246418
Number of successful extensions: 659
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)