Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m04
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.1  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   9.1  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   9.1  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.1  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 617 VERSSNTLCYFLVVKCIQSCPLFYYLSAK 531
           VE SS  +CY  V  C++  P +  +S K
Sbjct: 224 VEHSSGEVCYLKVKACVKDKPEWQPISLK 252


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 617  VERSSNTLCYFLV-VKCIQSCPLFYYLSAKC*LQKSMFVLVLYETCFD 477
            ++  +N+L ++L  + C +  P+FY L+A+   + S F   L   C++
Sbjct: 2281 LDELNNSLQHYLQNLPCKKFIPVFYQLAARLMNENSKFQQSLTSICYN 2328


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 401 DYENNLPEFSAWLDNKYEHYLKENLYRSTFH 493
           D   +LPEF   L   Y  YL+ N  +S F+
Sbjct: 59  DRIKSLPEFKGSLPELYSGYLEANSDKSLFY 89


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 383 RNRRRFDYENNLPEFSAWLDNKYEH 457
           +NR++ + EN LP +     +KY++
Sbjct: 75  KNRKKLNSENELPNYGEKFTHKYDN 99


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 437 LDNK-YE-HYLKENLYRSTFHIKLKQTSTFEANTLPTDNRTMGSFEYILRPKNSIE 598
           L+NK +E +Y K+NL+R   + +      +    LPT  R  G   +    KN  E
Sbjct: 23  LENKQFEGYYKKQNLFRGKPNDEFDSFMEYMRKPLPTTFRICGYRHHAFELKNHFE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,040
Number of Sequences: 5004
Number of extensions: 55583
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)