Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m04
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068...    28   7.1  
08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238           28   7.1  
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908...    27   9.4  

>11_04_0165 +
           14305885-14306007,14306538-14306642,14306792-14306869,
           14307710-14307757,14308173-14308314,14308394-14308464,
           14309210-14309306,14309517-14309728,14311995-14312267
          Length = 382

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 361 RIPLERFHE---PILVSSFFFVVLTIERLRNLSVINKWVFH 248
           RIPL   +E   P+L S    + L  + L N +++N+W+ H
Sbjct: 41  RIPLSSANEDLQPVLASKRRILALNKKDLANPNIMNRWLHH 81


>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
          Length = 852

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 178 IKITITFA*RRGKHRNLIAKLLKCCEILTTDFNI--ITSYEKK 56
           + I+ T++ R+G  RNLI KL K  E + TD     ITS E+K
Sbjct: 232 VSISQTYS-RQGVLRNLIGKLFKDIEDVPTDIATMDITSLEEK 273


>09_05_0016 +
           20089545-20089748,20090072-20090263,20090644-20090814,
           20090915-20091096,20091189-20091435,20091776-20091908,
           20092070-20092599,20092940-20093170
          Length = 629

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +2

Query: 209 NFCQNWTNPVYDAMKNPFIYYAQIPQPLNSQHYKKERRNKNWFVK------AFQWYTQER 370
           NFC    + + + ++ P  +  + P    ++  K +RRN+NW +K      A   +  E 
Sbjct: 306 NFCL--VDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFPNEE 363

Query: 371 TIN-QRNRRRFDYENNLP 421
            IN   N    D EN +P
Sbjct: 364 IINLYLNDDNLDNENGVP 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,168
Number of Sequences: 37544
Number of extensions: 282069
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)