Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m04
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.038
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   1.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   1.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 29.1 bits (62), Expect = 0.038
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 186  LLNRNLRITFAKT--GRIPFTTP*KTHLFIT 272
            ++N NLR+TF+K   GR+ F TP +   FI+
Sbjct: 963  IVNSNLRLTFSKNVQGRVGFVTPFEHRHFIS 993


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 219 WQKLSANSDSATYRSKSQSHSLEDEEN 139
           W++LSA  DS     K   H L+  +N
Sbjct: 98  WERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 219 WQKLSANSDSATYRSKSQSHSLEDEEN 139
           W++LSA  DS     K   H L+  +N
Sbjct: 98  WERLSAKYDSTGEYKKRYEHGLQFAKN 124


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 368 RTINQRNRRRFDYENN 415
           RTI+  N  +++Y NN
Sbjct: 88  RTIHNNNNYKYNYNNN 103


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 353 WYTQERTINQRNRRRFDYENNL 418
           W+T   TI+++ R+    E+N+
Sbjct: 604 WFTTSGTISEKFRKLIRIEDNV 625


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 24  LINSHNQIHKRFFSYEVMILKSVVKISQHFKSFAIK 131
           L+N HN+  ++    +    +S +K S   K   IK
Sbjct: 643 LLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIK 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,924
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)