Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m01
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.0  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 484  PLRLGV*SRTNPSPLSTVLEWL*YRYVRALVILIG*SYPHLYSSANNDVRIF 329
            P R+GV  + NP P    + W     + A+  ++    P+ Y    + +  F
Sbjct: 2124 PNRMGVSGKLNPQPWMAAITWPIALVLLAIAFVVYRGLPNFYRQCPSKIPAF 2175


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 341 CKNIFMCFK*SLGKLISRS 285
           C  +F+CF  SLG LI RS
Sbjct: 412 CIFVFLCFASSLGALIHRS 430


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 370 DRIILLVSPELEHIDITAILKQLIKDLGLFVITRRVVMDRY-EKHENYMPGCVSPVVLSE 546
           ++ ILL  P+L      +   +L + L             Y E+H+NY       V  SE
Sbjct: 216 EKPILLAGPKLRAAGAESAFVKLAEALNCAAFIMPAAKGFYSEEHKNYAGVYWGEVSSSE 275

Query: 547 ITKTL-TMKDQILQAGWLMFDH 609
            TK +    D ++ AG L  D+
Sbjct: 276 TTKAVYESSDLVIGAGVLFNDY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,377
Number of Sequences: 5004
Number of extensions: 52709
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)