Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m01
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0737 - 31328473-31330513,31331015-31331184                       29   2.4  
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139...    28   5.4  
01_01_0735 + 5730783-5733320                                           28   5.4  
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    28   7.2  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    28   7.2  

>02_05_0737 - 31328473-31330513,31331015-31331184
          Length = 736

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 202 NRPLEMVPRFIPYMEKYRVYQIFKDMLKDLLINLPKDHLKHMKIFLHRYSQSCKD 366
           N+ L+M+   + YM++  V Q  +  + +L +NL +DH+ H  +   R   +  D
Sbjct: 110 NKALQMIRDILMYMDRTYVPQSRRTPVHELGLNLWRDHIIHSPMIHSRLLDTLLD 164


>02_04_0086 +
           19610899-19610992,19613399-19613652,19613744-19613955,
           19614059-19614320,19614432-19614728
          Length = 372

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 LPKDHLKHMKIFLHRYSQSCKDADRIILLVSPEL 402
           +PKD  KH  IF+H +     DA    L VSPEL
Sbjct: 89  VPKDQAKHKIIFVHGFDSCRYDA----LQVSPEL 118


>01_01_0735 + 5730783-5733320
          Length = 845

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 279 HVLKYLVYSIFFHIRNKPWDHFK--WSIRSIRFS-HFCQY 169
           H L+YL +    H+R   W+ FK  W I    F  ++CQY
Sbjct: 263 HSLQYLRFESDGHLRLYEWEEFKQRWVIAKDIFELNYCQY 302


>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 166 SILTEMTETDATNRPLEMVPRFIPYMEKYRVYQIFKDMLKDLLINLPKDHLKHMKIFLHR 345
           S+L+   E + T  P E  PR+ P  E+ R   I + +    ++N P+D ++ +++ L  
Sbjct: 54  SLLSSGCE-EGTRNP-EPKPRWNPRPEQIR---ILEGIFNSGMVNPPRDEIRRIRLQLQE 108

Query: 346 YSQ 354
           Y Q
Sbjct: 109 YGQ 111


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 220 VPRFIPYMEKYRVYQIFKDMLKDLLINLPKDHLKHMKIFLH 342
           +P  +P +E   V+ +  +++   +  L   HLKH+ +FLH
Sbjct: 734 LPSIVPTIETLTVFSV-SEIINTPIAPLRFLHLKHLTVFLH 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,337
Number of Sequences: 37544
Number of extensions: 293353
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)