Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24m01
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    32   0.40 
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    28   4.9  
U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeo...    28   6.5  
AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox ...    28   6.5  

>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -3

Query: 503 SCFSYRSITTRRVITNKPKSFINCFRMAVISICSSSGDTN 384
           +C SYRS+  RR+   KP+SFIN +   + +I +SS D N
Sbjct: 226 TCESYRSLFQRRIDGCKPRSFINNY-SKMNNIWNSSIDIN 264


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -3

Query: 503 SCFSYRSITTRRVITNKPKSFINCFRMAVISICSSSGDTN 384
           +C SYRS+  RR+   KP+SFIN +   + +I +SS D N
Sbjct: 226 TCESYRSLFQRRIDGCKPRSFINNY-SKMNNIWNSSIDIN 264


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 221 SQGLFLIWKNIEYTKYLRTC 280
           S+GLF+  +N   +KYLRTC
Sbjct: 10  SRGLFIFGQNFLISKYLRTC 29


>U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeobox
           protein 14 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 375 DHPISITRARTYRYHSHSKTVDKGLGFVRDHTPS 476
           DHP+       Y +HS  +T DK   + R+ TPS
Sbjct: 274 DHPMDDGNESNYLFHSREQTPDK---YYRNETPS 304


>AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox
           protein CEH-14 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 375 DHPISITRARTYRYHSHSKTVDKGLGFVRDHTPS 476
           DHP+       Y +HS  +T DK   + R+ TPS
Sbjct: 274 DHPMDDGNESNYLFHSREQTPDK---YYRNETPS 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,636
Number of Sequences: 27780
Number of extensions: 285431
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)