Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l18
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.4  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    27   1.8  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   1.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   5.6  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    25   9.8  

>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 534 YFTLESTNVINFLLDPLDFF-PHRQLAIIVAKTTTDPTPNIIGSTILELIV 385
           YF+L + ++ N L   + FF P+    I+ AK     T  IIG TI  +++
Sbjct: 268 YFSLRTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVI 318


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 597 LPSPQHVLGLPIGQHI 644
           LP    VLGLPIGQH+
Sbjct: 83  LPRANDVLGLPIGQHL 98


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 148 TENNVMNQNSEW-QHSLVFNQNKNILSYSLRVRQTPFADDKDTTFRDEILF 297
           T NN+     E  +H   +NQN+N L  S+ + Q    +  +   R + LF
Sbjct: 25  TSNNIQQYKDETNRHQFEYNQNRNQLLRSIHIIQNLLNELDNYVDRSDCLF 75


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 245 KRHSPTTRTPRSEMKSYLLCNNTAVLQVYVI*ISKNSKEFEEHKMFQTINSKI 403
           ++HS   +T  +E+  Y+L   T   +VYV      SK F  H + +  N+ I
Sbjct: 107 RKHSLVYKT--AEITKYILTIGTPETKVYVDMRLARSKRFSAHNIAKEANTDI 157


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 495 LDPLDFFPHRQLAIIVAKTTTDPTP 421
           LDP  +F +R   I+  + T DP P
Sbjct: 70  LDPSQYFENRSRTIMELRQTKDPNP 94


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 515 VDSNVKYALPLIEREEISHDTRRFRAGTAVSSTCIGITDRSTYSFVC 655
           V S++K    + E  EI  DT    AG   SS C+  +++   S +C
Sbjct: 60  VQSDMKNLKSIFESVEI--DTVVHAAGVLQSSLCVRTSEKEIDSIIC 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,935
Number of Sequences: 5004
Number of extensions: 47860
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)