Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24l18
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 32 0.36
05_05_0291 + 23882579-23882660,23883073-23883214,23883310-238834... 32 0.47
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 32 0.47
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331... 31 0.82
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 31 1.1
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 31 1.1
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287... 29 3.3
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 29 3.3
09_02_0090 - 4147108-4147191,4147629-4147697,4148089-4148343,414... 28 7.7
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486... 28 7.7
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 597 LPSPQHVLGLPIGQHIHLSAKL 662
LPSP LGLP+G+H+++ A +
Sbjct: 653 LPSPDQKLGLPVGKHVYVCASI 674
>05_05_0291 +
23882579-23882660,23883073-23883214,23883310-23883400,
23883555-23883632,23883764-23883844,23883934-23884023,
23884658-23884723,23884883-23884987,23885127-23885219
Length = 275
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 597 LPSPQHVLGLPIGQHI 644
LP+P VLGLPIGQHI
Sbjct: 57 LPTPASVLGLPIGQHI 72
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 597 LPSPQHVLGLPIGQHI 644
LP+P VLGLPIGQHI
Sbjct: 67 LPTPTSVLGLPIGQHI 82
>07_01_0436 +
3317334-3317423,3317561-3317908,3317996-3318331,
3318384-3318442,3318640-3318709,3319259-3319579
Length = 407
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 420 NIIGSTILELIV*NILCSSNSLEFLEI 340
N+IG I + V N+LC+ N LEFLEI
Sbjct: 171 NLIGVNITDEGVQNLLCNPNVLEFLEI 197
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 597 LPSPQHVLGLPIGQHIHLSAKL 662
LPS VLGLP+G+HI + A +
Sbjct: 680 LPSSDQVLGLPVGKHIFVCASI 701
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 597 LPSPQHVLGLPIGQHIHLSAKL 662
LPS VLGLP+G+HI + A +
Sbjct: 680 LPSSDQVLGLPVGKHIFVCASI 701
>03_06_0733 +
35825541-35826052,35826728-35826871,35828638-35828709,
35829232-35829739
Length = 411
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 570 MTPGDSGLGLPSPQHVLGLPIGQH 641
+TPGD+G G+P P L L I QH
Sbjct: 110 LTPGDAGYGMPRP---LALQISQH 130
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 347 WKSKSHTPVKQLYYCIINKISSRNVVSLSSANGVWRT 237
W S ++++Y C +I + V++++S G WRT
Sbjct: 747 WSKMSTAGLQRIYECYTWQIYATKVLNMASIYGFWRT 783
>09_02_0090 -
4147108-4147191,4147629-4147697,4148089-4148343,
4148701-4148865,4149000-4149044,4149193-4149267,
4149397-4149573,4149680-4149904,4150058-4150183
Length = 406
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 327 TCKTAVLLHNK*DFISERGVLVVGE 253
T T LL + D I ++G+LVVGE
Sbjct: 336 TSNTKTLLEKRGDLIRDKGILVVGE 360
>08_02_0184 +
13947739-13947930,13948289-13948465,13948546-13948665,
13948709-13948753,13948848-13949012,13949324-13949402,
13949552-13949631,13950548-13950616,13950948-13951031
Length = 336
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 348 LEI*ITYTCKTAVLLHNK*DFISERGVLVVGE 253
LE + T T +LL D I E+G+LVVGE
Sbjct: 259 LETFVVDTSNTKMLLDMHGDTIREKGILVVGE 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,130
Number of Sequences: 37544
Number of extensions: 263035
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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