Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l15
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.8  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 465 DWENLIYTTESVYRLFSSFTCRPPFEGHHTT*IGASYVCCCAVSTQETVFSGD--CQFWG 292
           D   L+YT ++V+R+ +   C     GH  T I A +    + S++    SGD   + W 
Sbjct: 106 DHLTLLYTPQAVFRVRAVTRCTASMNGHDGTIISAQF--SPSTSSRLVTGSGDFTARLWD 163

Query: 291 IHVQS 277
              Q+
Sbjct: 164 CDTQT 168


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 425 GSSRPLLA--GHPSKVITPPR*GRPTFAVARFPLKKPSSPAIVSSGVYTSSPFP 270
           G S P L   G+ S+  TPP    P+   +  P   PS+P  +  G   + P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 490 SMSSSGRLWASNDDGVCL 543
           S+  S RL ASND GVC+
Sbjct: 157 SLKYSNRLQASNDTGVCV 174


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 283 DVYTPELTIAGEDGFLSGNRATANVGRPYLGGVMTFEGW 399
           D++TPE    G   F+ G  A A++G P   G   ++ W
Sbjct: 205 DIFTPETVGFGISLFVWGANAGASIGSPI--GEALYDHW 241


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 480 GLSGVDWENLIYTTESVYRLFSSFTCRPPFEGHH 379
           G+   ++E  I  T+  +  F S    PPF  HH
Sbjct: 312 GVYDKEYEKKIEKTKRNFPKFQSSATYPPFSAHH 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,676
Number of Sequences: 5004
Number of extensions: 48699
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)