Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l15
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230...    29   3.9  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    29   3.9  
02_02_0353 + 9276316-9276518,9276915-9277314                           28   5.2  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    28   6.9  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    27   9.1  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    27   9.1  

>09_01_0155 -
           2301903-2302151,2302334-2302491,2302651-2302819,
           2303796-2304839,2305792-2306075,2306318-2307333,
           2307937-2308085
          Length = 1022

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 505 GRLWASNDDGVCLSDSTKGTSKKGDK--NGRRGRD 603
           G L  +NDD   ++++T+G  ++GDK  NG   RD
Sbjct: 6   GELALANDDKATVAEATRGRGEEGDKDVNGDGVRD 40


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 482 PGSAVWIGRT*ST-PLSRFIGSSRPLLAGHPSKVITPPR*GRPTFAVARFPLKKPS 318
           PG+ V   R  S  P+ R   SSRP     PS    PP    P    AR P ++P+
Sbjct: 45  PGAHVHYFRAASPIPIFRAAASSRPPRPPPPSTTTAPPPPAAPAVTPARPPPQQPA 100


>02_02_0353 + 9276316-9276518,9276915-9277314
          Length = 200

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 282 GRVYPRTDNRRRRRFLEWKPRNSKRRTP 365
           G V  R+ +R RRR   W P +S RR+P
Sbjct: 152 GLVDDRSRSRHRRRRRRWCPSSSPRRSP 179


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 325 FLSGNRATANVGRPYLGGVMTFEGWPASKGREEPINRLSGVD*V--LPIHTAEPGLL 489
           F SG+RA  N      GG++  E   A  G+  P+ +    D V  LP+   EP  L
Sbjct: 510 FASGSRAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPVEPLEPAEL 566


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 417 RRADKPTQWCRLGSPNPH 470
           R++DKPT+W    +P+PH
Sbjct: 307 RQSDKPTEWQTEHAPDPH 324


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 231  GVTSSTQIVCKLRRKWTGRVYPRTDNRRRRRFLEW 335
            G   +T+ VC   + WT RV  R   R +RR L W
Sbjct: 1006 GAAGATEAVCF--QMWTARVNYRLSKRGKRRDLFW 1038


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,774,716
Number of Sequences: 37544
Number of extensions: 328301
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)