Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24l15
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 36 0.018
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 35 0.041
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 35 0.041
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 35 0.041
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 35 0.041
AF077540-2|AAC26311.2| 362|Caenorhabditis elegans Hypothetical ... 31 0.88
AF077540-1|ABC71801.1| 422|Caenorhabditis elegans Hypothetical ... 31 0.88
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 29 2.7
DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin f... 29 2.7
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 6.2
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 KLRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRT--PLSRWCDDLRR 395
K + W G V RTD R +W PR+ KR P RW D LR+
Sbjct: 120 KRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRK 166
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 234 VTSSTQIVCKLRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRT--PLSRWCDDLRR 395
V V K + W G V R D R EW+P KR P RW D LR+
Sbjct: 800 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 855
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 234 VTSSTQIVCKLRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRT--PLSRWCDDLRR 395
V V K + W G V R D R EW+P KR P RW D LR+
Sbjct: 975 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 1030
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 234 VTSSTQIVCKLRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRT--PLSRWCDDLRR 395
V V K + W G V R D R EW+P KR P RW D LR+
Sbjct: 714 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 769
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 234 VTSSTQIVCKLRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRT--PLSRWCDDLRR 395
V V K + W G V R D R EW+P KR P RW D LR+
Sbjct: 326 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 381
>AF077540-2|AAC26311.2| 362|Caenorhabditis elegans Hypothetical
protein T07H3.3a protein.
Length = 362
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 484 LLSMSSSGRLWASNDDGVCLSDSTKGTSKKGDK 582
L+ +S +G WA N DG C + G KK ++
Sbjct: 67 LILISENGNRWAKNFDGYCFKFNGTGVHKKSER 99
>AF077540-1|ABC71801.1| 422|Caenorhabditis elegans Hypothetical
protein T07H3.3b protein.
Length = 422
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 484 LLSMSSSGRLWASNDDGVCLSDSTKGTSKKGDK 582
L+ +S +G WA N DG C + G KK ++
Sbjct: 67 LILISENGNRWAKNFDGYCFKFNGTGVHKKSER 99
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 469 TAEPGLLSMSSS--GRLWASNDDGVCLSDSTKGTSKKGDKN 585
T + L+S S+S G+L S DDGV SDS +KK ++
Sbjct: 375 TTDATLVSTSTSNIGKLSTSRDDGVLSSDSNDKLTKKSTEH 415
>DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin
family protein protein.
Length = 361
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 469 TAEPGLLSMSSS--GRLWASNDDGVCLSDSTKGTSKKGDKN 585
T + L+S S+S G+L S DDGV SDS +KK ++
Sbjct: 263 TTDATLVSTSTSNIGKLSTSRDDGVLSSDSNDKLTKKSTEH 303
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 264 LRRKWTGRVYPRTDNRRRRRFLEWKPRNSKRRTPLSRWCDDLRRV 398
LRR R R+ RRRRR PR + T +RWC + V
Sbjct: 571 LRRDNRDRSRSRSPPRRRRR--SRSPRRREEHTDPTRWCVQVTNV 613
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,973
Number of Sequences: 27780
Number of extensions: 274339
Number of successful extensions: 725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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