Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l13
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.2  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   6.6  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   8.7  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   8.7  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 229 KMKRSVN-CVPVRTSKSRELRGSILYTDCFCLRRNGLQYDC 348
           K KR++  C   R  K+R L GS+   +  CLR   L  DC
Sbjct: 18  KRKRALEACDSCRKQKTRCLAGSVEDENRACLRCRSLNMDC 58


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 630 RKPFNCLEQCLYISLREQCNVIFNYILYS*KNGSSFHFIAFNLAIFKLCL 481
           R   NC  + +Y  L+ +C +   +I    K   S+HFI+F+  +  L L
Sbjct: 51  RSKQNCRLKEIYCRLKIRCRLKKKFIKSLSKKIISYHFISFHTIVVLLLL 100


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 343 DCRRSGCQGSQLCQTLPRPLCEPAHVAC--TSHFKN 444
           DC  + C   + C+     LC+    AC    HFKN
Sbjct: 334 DCENNPCCDGKTCKLTKGSLCDDQQDACCYQCHFKN 369


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 323  VGTAFNTTAAEVAAKGRNCAKPYQ 394
            +GTAFN    EV   G   A PYQ
Sbjct: 1707 MGTAFNMPTNEVHGVGAEMASPYQ 1730


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 334 GRSDANKSNQYTKYYRVTPGFSRSGLEHSSRFASF*EIFSGIYTRTLKSSSSLEDY 167
           G +  +  NQ ++Y        +  LEH  + A   ++ S +Y   LK+ S L DY
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVLKNFSFLSDY 194


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 5   KFLYILKWLMQNFS 46
           K LYI  WL+QNF+
Sbjct: 169 KILYICHWLLQNFN 182


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 273 FRGPDWNTVHASLHFEKSLVGF 208
           FR P+W+ +   +  +KS +GF
Sbjct: 4   FRRPNWSALFEKIFIQKSFLGF 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,618
Number of Sequences: 5004
Number of extensions: 54112
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)