Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l11
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 373 RNDILMNSSRASTFSHGLDNISLMSMNFSHYE-LMRNLSQANSNSDGTFSGSNCNTATRP 549
           RN  + +S  + T  H   +   +S    +   ++ + + AN+NS  +   S    AT  
Sbjct: 712 RNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTS 771

Query: 550 VDLN--EKNEHLER 585
           ++    EK+EH E+
Sbjct: 772 LEAEKREKSEHCEK 785


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -1

Query: 533 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 357
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 325 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 369


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -1

Query: 533 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 357
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 340 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 384


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 550 VDLNEKNEHLERYFRSAEIWSDRN 621
           +D++EKN+ L       +IW+D +
Sbjct: 43  IDVDEKNQILTTNCWVTQIWTDHH 66


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 494 ILIQMVHLVEVIVIPQRGLS 553
           IL+QM+HL+    +   G+S
Sbjct: 12  ILLQMIHLIAWASLENTGIS 31


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 343  STPGSPTIRHRNDILMNSSRASTF 414
            STP +  +  +ND +++ S +S+F
Sbjct: 935  STPVNKKVYKQNDYIVDESSSSSF 958


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,727
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)