Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l08
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   1.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   1.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   3.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 146 YYTNYSDNVKNLYK 105
           Y  NY++N K LYK
Sbjct: 105 YNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 146 YYTNYSDNVKNLYK 105
           Y  NY++N K LYK
Sbjct: 105 YNNNYNNNYKKLYK 118


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 161 FNLEIYYTNYSDNVKNLYK*KKVFY 87
           +N ++YY NY  N++ +     V+Y
Sbjct: 111 YNKKLYYKNYIINIEQIPVPVPVYY 135


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 161 FNLEIYYTNYSDNVKNLYK*KKVFY 87
           +N ++YY NY  N++ +     V+Y
Sbjct: 336 YNKKLYYKNYIINIEQIPVPVPVYY 360


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 161 FNLEIYYTNYSDNVKNL 111
           +N ++YY NY  N++ +
Sbjct: 100 YNKKLYYKNYIINIEQI 116


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 161 FNLEIYYTNYSDNVKNL 111
           +N ++YY NY  N++ +
Sbjct: 341 YNKKLYYKNYIINIEQI 357


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 319 FNFTLKHYEAISNLP 275
           FN T+K+Y++ S +P
Sbjct: 297 FNLTIKYYKSGSTVP 311


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 310 TLKHYEAISNLP 275
           TLK+YE  SN+P
Sbjct: 307 TLKYYEVGSNVP 318


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 336 LDVYIYLISH 307
           LD Y+Y ISH
Sbjct: 323 LDPYVYAISH 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,539
Number of Sequences: 438
Number of extensions: 1069
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)