Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l07
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    27   1.5  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   2.7  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   3.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.1  

>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 350 DGAAQNFRLESWMSDLPIQLKDIPIIYLAIPGSHDSM 460
           D  + N  LESW ++L + + D   I + I  SHD +
Sbjct: 175 DAISTNDELESWSNNLLLSMLDQKNITVPIGASHDDL 211


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 446 CQVWLSRLLVYPSAVLVDHSSMIQDESFAPLHPHSLL*RVVLKRSII 306
           C  W+ +    P+A  ++   M+ DE + P   +  + + +LKRSII
Sbjct: 33  CVEWIQKQTYPPNAKDINLEDMLDDEEWNPEAFYKNVPKSMLKRSII 79


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +2

Query: 449 HDSMTYGITKSSGLAPDAEPILHRLY------PLFRGTILRWTIT 565
           H ++ YG+   SG     E +LH LY      P F  ++L++ IT
Sbjct: 318 HITLNYGLALRSGSNNQEEEVLHLLYKYLLFSPKFPKSLLQYVIT 362


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 368 FRLESWMSDLPIQLKDIPIIY 430
           FR   WMS  P  L D+ IIY
Sbjct: 320 FRYARWMSAQPDHLNDVSIIY 340


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 392  DLPIQLKDIPIIYLAIPGSHDSMTYGITKSS 484
            DL +Q  D+PIIY  I    D  T  +  +S
Sbjct: 2032 DLDLQPVDLPIIYTPISSGQDVQTSALLTAS 2062


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -2

Query: 57   VCFVRNGIKY---KYSKVKTK 4
            VCFVRN +KY    ++KV TK
Sbjct: 951  VCFVRNSLKYLLDDFTKVITK 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,284
Number of Sequences: 5004
Number of extensions: 43729
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)