Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l04
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.060
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    28   1.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.7  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    27   3.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   3.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 26/67 (38%), Positives = 28/67 (41%)
 Frame = +1

Query: 322 GNSGRYGRRGEPGVPGSIGFTGFSGLMGLPGASGKPGERGDKGAPGFNGEPGQDGLVGPL 501
           G  G +G       PG  GF GF G  G     G  G  G  G  GF G PG  G  GP 
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG-GPGGFEGGPGGFG-GGPG 245

Query: 502 GPKGYIG 522
           G  G +G
Sbjct: 246 GFGGGLG 252


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 206 VHLDYLDVQDHLVRWDLLVHKAYKE---VTAYKVLQDLKE*KE 325
           +H +Y   Q H+VR + L+H   KE    T Y   + L E KE
Sbjct: 243 IHEEYEQQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKE 285


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
 Frame = +1

Query: 355 PGVPGSIGFTGFSGLMGLPGASGKPGERGDKGAPGFNGEPGQDGLVGPLG---PKGY 516
           PG+P       F G   +P   G PG     GAPG         L  P G   P GY
Sbjct: 533 PGMPAP-----FPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGY 584


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 280 SNGLQGFTGPKGMKGNSGRYGRRGEPGVPG 369
           ++GL G T  +G KG+  R GRR +PG  G
Sbjct: 22  ASGL-GKTSGRGHKGSGQRRGRRIKPGFEG 50


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 393 WINGITWSQWK 425
           W+NGI W  WK
Sbjct: 208 WLNGIIWKSWK 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.144    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,790
Number of Sequences: 5004
Number of extensions: 32691
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)