Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l04
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    35   6e-04
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.81 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 265  QGLQGSNGLQGFTGPKGMKGNSGRYGRRGEPGVPGSI-GFTGFSGLMGLPGASGKPG-ER 438
            QG+QG    QG  G +G++G  G  G +G  GVPG + G     G  G+ G +   G +R
Sbjct: 842  QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFG-QGVQGMNVPYGMQR 900

Query: 439  GDKG 450
            G  G
Sbjct: 901  GQSG 904



 Score = 29.5 bits (63), Expect = 0.028
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 AQGLQGSNGLQGFTGPKGMKGNSG 333
           AQG+QG  G+QG  G +G++G  G
Sbjct: 850 AQGVQGVQGVQGVQGVQGVQGVQG 873


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 391 SGLMGLPGASGKPGERGDKGAPGFNGEPGQDGL 489
           + L+G P A   P E G+ G  G  GE   D L
Sbjct: 42  NALVGTPAAPNMPAEEGE-GMAGVTGEEPFDTL 73


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 409 PGASGKPGERGD 444
           PG  G PG+ GD
Sbjct: 332 PGPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 409 PGASGKPGERGD 444
           PG  G PG+ GD
Sbjct: 332 PGPPGVPGDHGD 343


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 409 PGASGKPGERGD 444
           PG  G PG+ GD
Sbjct: 271 PGPPGVPGDHGD 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.144    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,193
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)