Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l03
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    28   0.69 
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   2.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   6.4  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   6.4  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 326 NLLVKNIIHLPQYWRNDNLNSLNISDYRLHSAPDIMNNRHKLAIRVTTAN 177
           NL   N++  P+Y  N N  S N+ D  +   P+  +N  K +  +  +N
Sbjct: 42  NLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSN 91


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 323 LLVKNIIHLPQYWRNDNLNSLNISDYRLHSAPDIMNNRHKLAIRVTTANKHIKVIKFSLD 144
           L++ + I  PQY  N+ +N LN+ D  + S   +    HK  ++V      + V K ++D
Sbjct: 34  LVILDNIRRPQY--NEIVN-LNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVDVRKTTID 90

Query: 143 F 141
           F
Sbjct: 91  F 91


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 326 NLLVKNIIHLPQYWRNDNLNSLNISDYRLHSAPDIMNNRHKL--AIRVTTAN 177
           N L K + +   Y  +    SLN+S   LH A +   NR  L  A  V T+N
Sbjct: 421 NGLKKRLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVRASDVFTSN 472


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 157 NSHSISYRDAFPIFFFNTHINASWDI 80
           +S   SY   F I    TH N SWD+
Sbjct: 861 HSEFASYETQFGITKRPTHYNTSWDV 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,930
Number of Sequences: 5004
Number of extensions: 27664
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)