Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24l03
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41539-1|AAB52498.1|  246|Caenorhabditis elegans Carbonic anhydr...    30   0.79 
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    27   7.3  
U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U41539-1|AAB52498.1|  246|Caenorhabditis elegans Carbonic anhydrase
           protein 3 protein.
          Length = 246

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 305 IHLPQYWRNDNLNSLNISDYRLHSAPDIMNNRHKLAIRVTTANKHIKVIKFSLDFISRCV 126
           I L +  R D  + +   +Y      DI+NN H + +     ++H ++    LD + R V
Sbjct: 29  IDLGEVERKDTHDGIKFVNYDHPIQGDIVNNGHSVQMTPELRSEHPEIYGGGLDQVYRLV 88

Query: 125 PYFF 114
            Y F
Sbjct: 89  QYHF 92


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 160 ITLICLFAVVTRIASLWRLFIISGALCNL*SEIFKEFKLSFLQY 291
           +TL  LF   ++I S ++ FII   + N+ SE +  F +  + Y
Sbjct: 31  VTLNALFRESSQIFSTYKYFIIVHIIINIISECYVSFMMLPMTY 74


>U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical
           protein C23G10.6 protein.
          Length = 540

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +2

Query: 209 GDYSLYRERC--VIYNQKYSKNLSYRFSNIVED 301
           G+Y + +E    ++YN+KY +N  Y  ++I+E+
Sbjct: 429 GNYGIVKEAVHQILYNEKYKRNAKY-LADILEN 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,728,960
Number of Sequences: 27780
Number of extensions: 149404
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)