Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k23
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   2.6  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   4.6  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.6  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   4.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   4.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   6.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   6.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.0  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.0  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.0  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 324 ICHDCLQQVSTLHLYAVKVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQS 503
           + + C     T  +  +  +KT  F +F+K   K ++++G   K+   + + + + L  S
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPNS 197

Query: 504 -NKNSETAKSSP 536
            N  S T  S P
Sbjct: 198 TNFASTTFPSVP 209


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 468 IGALSVEDLKQSNKNSETAK 527
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 411 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQ-SNKNSETAKSSPSPERQHGDTKISKQ 578
           +QK K  K+D   N+ TP   +  +E      +K+ +++K  P    + G  KI ++
Sbjct: 49  RQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQE 105


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 559 SPCCRSGEGLDLAVSEFLLDCFKS----STESAPINGVILFVVPSCF 431
           +P      GL L + E L+DCF +    +TE   IN +    +PS F
Sbjct: 141 TPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIP--TLPSVF 185


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 282 FDITVRADDNLPKAICHDCLQQV 350
           FDI V+   NL  A CH C++ V
Sbjct: 443 FDILVKPQLNLLAAPCHQCVELV 465


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 468 IGALSVEDLKQSNKNSETAK 527
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 411 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQ 578
           K K    K +G  NK+T      S      S +   +     S ER+H D+  S Q
Sbjct: 292 KDKKPSHKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQ 347


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 468 IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKI 569
           I  + VE L QSN N +++K +   E  HG+ ++
Sbjct: 319 ITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQV 352


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 165 FGNLEKIIVRELSCRLCLCTDVVKLKPLSNEVKRKLK 275
           F ++  ++++ LS ++ LC  ++  +   NEVK  L+
Sbjct: 330 FYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQ 366


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 411 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPS 539
           ++ +KGE +     K +         DLK SN + ET+ S  S
Sbjct: 107 RKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGS 149


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 384  KTQKFLEFHKQKSKGEKQDGTTNKMTPLI 470
            K+  F+EF K+ S     + T  KM PL+
Sbjct: 936  KSNAFVEFGKELSMDRYVEDTDGKMAPLL 964


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 165 FGNLEKIIVRELSCRLCLCTDVVKL-KPLSNEVKRKLKRLFDITVRADDNL---PKAICH 332
           FG+L+ II+ +L   +    D+V + K L +     LK   D +VRA  +L   P+A+  
Sbjct: 456 FGHLKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDLDGSVRALLSLSQWPRALSR 515

Query: 333 D 335
           D
Sbjct: 516 D 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,180
Number of Sequences: 5004
Number of extensions: 46474
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)