Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k23
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0272 + 2105579-2105671,2105779-2105882,2106006-2107014,210...    34   0.094
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    32   0.38 
12_02_0720 - 22510996-22512949,22513752-22514533                       28   6.2  
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693...    27   8.2  

>03_01_0272 +
           2105579-2105671,2105779-2105882,2106006-2107014,
           2107130-2107153
          Length = 409

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 462 PLIGALSVEDLKQSNKNSETAKS-SPSP 542
           P++GAL+VED+K S+ NS   +S SPSP
Sbjct: 336 PILGALTVEDIKISSANSSPRRSRSPSP 363


>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 462 PLIGALSVEDLKQSNKNSETAKSSPSPERQ 551
           P++GAL+V+DLKQS+  S + + SPS  R+
Sbjct: 383 PVLGALTVDDLKQSSATS-SPRRSPSHNRE 411


>12_02_0720 - 22510996-22512949,22513752-22514533
          Length = 911

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
 Frame = +3

Query: 228 VVKLKPLSNEVKRKL--KRLFDITVRADDNL---PKAICHDC----LQQVSTLHLYAVKV 380
           V ++KPLSN+  R+L  KR+FD       +L    + I   C    L  ++T  L A K 
Sbjct: 308 VYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKP 367

Query: 381 EKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDL 494
             ++++ + +K  S G + +   + M  ++ +LS  DL
Sbjct: 368 RNSEEWDKVNKSISLGLENNLDVDNMRKIL-SLSYNDL 404


>09_02_0288 +
           6936867-6936879,6936965-6937038,6937445-6937588,
           6937754-6937958,6938552-6938852,6938952-6939150,
           6939393-6939477,6939554-6939595,6939676-6939724,
           6939872-6939941,6940296-6940301
          Length = 395

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +3

Query: 411 KQKSKGEKQ----DGT-TNKMTPLIGALSVEDLKQSNKNSETAKS 530
           K K KG KQ    DG  +NK+  L   L VEDL   N ++E A +
Sbjct: 265 KSKKKGGKQLEVGDGKHSNKIRTLEDGLIVEDLSTGNLDAEMASN 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,245
Number of Sequences: 37544
Number of extensions: 248976
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)