Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k21
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577...    71   6e-13
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568...    55   5e-08
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     45   6e-05
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    30   1.7  
11_01_0708 + 5817545-5818957                                           28   6.8  
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451...    27   8.9  

>09_04_0095 -
           14556508-14556550,14556824-14556966,14557703-14557744,
           14557940-14558049,14558369-14558519
          Length = 162

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 46/116 (39%), Positives = 59/116 (50%), Gaps = 25/116 (21%)
 Frame = +3

Query: 3   RHILCEKQSKCLEALEKLKAG-----QKFPD-------------------VAAAYSE-DK 107
           RH+LCEKQ K  EA +KL+ G      K P                    +A  YSE   
Sbjct: 52  RHVLCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKLNAAVPVISYESQMIAQEYSECPS 111

Query: 108 ARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTNPPVKTKFGYHIIMVEGKK 275
            ++GGDLGW  RG M GPFQD AF+ P+ +      T+ P K+  GYH I+ EG+K
Sbjct: 112 GKKGGDLGWFPRGKMAGPFQDVAFSTPVGA------TSAPFKSTHGYHFILCEGRK 161


>07_03_1741 +
           29156076-29156316,29156554-29156676,29156784-29156875,
           29157577-29157677,29157752-29157862,29158254-29158362,
           29158589-29158639,29158758-29158838
          Length = 302

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
 Frame = +3

Query: 3   RHILCEKQS-KCLEALEK--LKAGQKFPDVAAAYSEDKARQ-GGDLGWMTRGSMVGPFQD 170
           +H+L  +Q  + L  LEK  +  G    D+A  YS   +++ GG LGW+ RG MV  F++
Sbjct: 99  QHLLVGEQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEE 158

Query: 171 AAFALPISSVTNPVYTNPPVKTKFGYHIIMV 263
           AAF  P++ V          KTKFG+H++ V
Sbjct: 159 AAFGAPLNKVVR-------CKTKFGWHLLQV 182


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 48  EKLKAGQ-KFPDVAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTN 221
           EK+ AG+ KF DVA   S+ + A++GGDLG   RG M   F+ A  AL +  +++ V T+
Sbjct: 165 EKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTD 224

Query: 222 PPV 230
             V
Sbjct: 225 SGV 227


>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  SKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDLG 131
           SKCL AL  +KAG      AAA +  K +Q G  G
Sbjct: 217 SKCLRALTTIKAGSGGAAAAAAAAAKKKQQQGGAG 251


>11_01_0708 + 5817545-5818957
          Length = 470

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 551 SLCTRCKCYRNISMPEIW*YASFDINEGNSSSNHNLC 441
           +L + C  + N+ + EI  +  F++ EG++S+   LC
Sbjct: 381 ALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLC 417


>04_04_1247 -
           32043776-32043880,32044296-32044505,32044595-32045101,
           32045362-32045583,32046054-32046184,32046737-32047745,
           32047830-32047904,32047995-32048066,32048153-32048328,
           32048494-32048646,32048739-32049234
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 407 QSFDDDMEDFSSRDYGLKMSF 469
           Q+FD+DME+ +S  YGL  +F
Sbjct: 510 QNFDEDMEEKNSETYGLCPAF 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,217
Number of Sequences: 37544
Number of extensions: 335133
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)